Mercurial > repos > frogs > frogs_3_1_0
diff test-data/references/normalisation.log @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
| author | frogs |
|---|---|
| date | Thu, 28 Feb 2019 10:14:49 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/references/normalisation.log Thu Feb 28 10:14:49 2019 -0500 @@ -0,0 +1,34 @@ +## Application +Software: normalisation.py (version: 3.1) +Command: ./../app/normalisation.py -n 100 -f res/04-filters.fasta -i res/06-affiliation.biom -s res/normalisation_report.html -l res/normalisation.log + +Application start: 13 Feb 2019 11:24:00 + +#Normalisation calculation + start: 13 Feb 2019 11:24:00 +######################################################################################################## +# Random sampling in each sample. (biomTools.py version : 0.10.1) +Command: + biomTools.py sampling --nb-sampled 100 --input-file res/06-affiliation.biom --output-file abundance.biom + +Execution: + start: 13 Feb 2019 11:24:00 + end: 13 Feb 2019 11:24:00 + + end: 13 Feb 2019 11:24:00 + +######################################################################################################## +# Update fasta file based on sequence in biom file (biomFastaUpdate.py version : 1.0.1) +Command: + biomFastaUpdate.py --input-biom abundance.biom --input-fasta res/04-filters.fasta --output-file sequence.fasta --log 1550053440.26_4588_tmp_fasta_update.log + +Execution: + start: 13 Feb 2019 11:24:00 + end: 13 Feb 2019 11:24:00 + + +#Summarise + start: 13 Feb 2019 11:24:00 + end: 13 Feb 2019 11:24:00 + +Application end: 13 Feb 2019 11:24:00