Mercurial > repos > frogs > frogs_3_1_0
diff test-data/references/09-affiliationsStat.log @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
| author | frogs |
|---|---|
| date | Thu, 28 Feb 2019 10:14:49 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/references/09-affiliationsStat.log Thu Feb 28 10:14:49 2019 -0500 @@ -0,0 +1,22 @@ +## Application +Software: affiliations_stat.py (version: 3.1) +Command: /home/maria/workspace/git/FROGS/FROGS_master/test/../app/affiliations_stat.py --input-biom res/06-affiliation.biom --output-file res/09-affiliationsStat.html --log-file res/09-affiliationsStat.log --tax-consensus-tag blast_taxonomy --identity-tag perc_identity --coverage-tag perc_query_coverage --multiple-tag blast_affiliations --rarefaction-ranks Family Genus Species + +######################################################################################################## +# Writes by sample the rarefaction data for rank(s) 4, 5, 6. (biomTools.py version : 0.10.1) +Command: + biomTools.py rarefaction --input-file res/06-affiliation.biom --output-file-pattern res/1550052876.48_4207_rarefaction_rank_##RANK##.tsv --taxonomy-key "blast_taxonomy" --step-size 432 --ranks 4 5 6 + +Execution: + start: 13 Feb 2019 11:14:36 + end: 13 Feb 2019 11:14:37 + +######################################################################################################## +# Produces a taxonomy tree with counts by sample. (biomTools.py version : 0.10.1) +Command: + biomTools.py treeCount --input-file res/06-affiliation.biom --taxonomy-key "blast_taxonomy" --output-enewick res/1550052876.48_4207_taxCount.enewick --output-samples res/1550052876.48_4207_taxCount_ids.tsv + +Execution: + start: 13 Feb 2019 11:14:37 + end: 13 Feb 2019 11:14:37 +