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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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## Application
Software: affiliations_stat.py (version: 3.1)
Command: /home/maria/workspace/git/FROGS/FROGS_master/test/../app/affiliations_stat.py --input-biom res/06-affiliation.biom --output-file res/09-affiliationsStat.html --log-file res/09-affiliationsStat.log --tax-consensus-tag blast_taxonomy --identity-tag perc_identity --coverage-tag perc_query_coverage --multiple-tag blast_affiliations --rarefaction-ranks Family Genus Species

########################################################################################################
# Writes by sample the rarefaction data for rank(s) 4, 5, 6. (biomTools.py version : 0.10.1)
Command:
	biomTools.py rarefaction --input-file res/06-affiliation.biom --output-file-pattern res/1550052876.48_4207_rarefaction_rank_##RANK##.tsv --taxonomy-key "blast_taxonomy" --step-size 432 --ranks 4 5 6

Execution:
	start: 13 Feb 2019 11:14:36
	end:   13 Feb 2019 11:14:37

########################################################################################################
# Produces a taxonomy tree with counts by sample. (biomTools.py version : 0.10.1)
Command:
	biomTools.py treeCount --input-file res/06-affiliation.biom --taxonomy-key "blast_taxonomy" --output-enewick res/1550052876.48_4207_taxCount.enewick --output-samples res/1550052876.48_4207_taxCount_ids.tsv

Execution:
	start: 13 Feb 2019 11:14:37
	end:   13 Feb 2019 11:14:37