diff test-data/references/03-chimera.log @ 0:59bc96331073 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647

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+++ b/test-data/references/03-chimera.log	Thu Feb 28 10:14:49 2019 -0500
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+## Application
+Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/remove_chimera.py (version : 3.1)
+Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/remove_chimera.py --input-fasta res/02-clustering.fasta --input-biom res/02-clustering.biom --non-chimera res/03-chimera.fasta --out-abundance res/03-chimera.biom --summary res/03-chimera.html --log-file res/03-chimera.log --nb-cpus 4
+
+########################################################################################################
+# Removes PCR chimera by samples. (parallelChimera.py version : 0.7.1 [vsearch v2.6.2_linux_x86_64])
+Command:
+	parallelChimera.py --lenient-filter --nb-cpus 4 --sequences res/02-clustering.fasta --biom res/02-clustering.biom --non-chimera res/03-chimera.fasta --out-abundance res/03-chimera.biom --summary res/1550052794.75_3868_03-chimera.fasta_summary.tsv --log-file res/1550052794.75_3868_03-chimera.fasta_tmp.log
+
+Execution:
+	start: 13 Feb 2019 11:13:14
+	end:   13 Feb 2019 11:13:53
+
+
+
+##Sample : 01
+## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_01.fasta.tmp --nonchimeras res/1550052794.82_3873_01.fasta --uchimeout res/1550052794.82_3873_01.fasta.log
+##Results
+sample_name: 01
+nb_chimera: 14
+chimera_abun: 14
+max_chimera_abun: 1
+nb_non_chimera: 14795
+non_chimera_abun: 29986
+
+##Sample : 02
+## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_02.fasta.tmp --nonchimeras res/1550052794.82_3873_02.fasta --uchimeout res/1550052794.82_3873_02.fasta.log
+##Results
+sample_name: 02
+nb_chimera: 7
+chimera_abun: 7
+max_chimera_abun: 1
+nb_non_chimera: 14930
+non_chimera_abun: 29993
+
+##Sample : 03
+## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_03.fasta.tmp --nonchimeras res/1550052794.82_3873_03.fasta --uchimeout res/1550052794.82_3873_03.fasta.log
+##Results
+sample_name: 03
+nb_chimera: 3
+chimera_abun: 3
+max_chimera_abun: 1
+nb_non_chimera: 14899
+non_chimera_abun: 29997
+
+
+## Removes the chimera observation from BIOM.
+
+