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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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## Application
Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/remove_chimera.py (version : 3.1)
Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/remove_chimera.py --input-fasta res/02-clustering.fasta --input-biom res/02-clustering.biom --non-chimera res/03-chimera.fasta --out-abundance res/03-chimera.biom --summary res/03-chimera.html --log-file res/03-chimera.log --nb-cpus 4

########################################################################################################
# Removes PCR chimera by samples. (parallelChimera.py version : 0.7.1 [vsearch v2.6.2_linux_x86_64])
Command:
	parallelChimera.py --lenient-filter --nb-cpus 4 --sequences res/02-clustering.fasta --biom res/02-clustering.biom --non-chimera res/03-chimera.fasta --out-abundance res/03-chimera.biom --summary res/1550052794.75_3868_03-chimera.fasta_summary.tsv --log-file res/1550052794.75_3868_03-chimera.fasta_tmp.log

Execution:
	start: 13 Feb 2019 11:13:14
	end:   13 Feb 2019 11:13:53



##Sample : 01
## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_01.fasta.tmp --nonchimeras res/1550052794.82_3873_01.fasta --uchimeout res/1550052794.82_3873_01.fasta.log
##Results
sample_name: 01
nb_chimera: 14
chimera_abun: 14
max_chimera_abun: 1
nb_non_chimera: 14795
non_chimera_abun: 29986

##Sample : 02
## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_02.fasta.tmp --nonchimeras res/1550052794.82_3873_02.fasta --uchimeout res/1550052794.82_3873_02.fasta.log
##Results
sample_name: 02
nb_chimera: 7
chimera_abun: 7
max_chimera_abun: 1
nb_non_chimera: 14930
non_chimera_abun: 29993

##Sample : 03
## Vsearch command: vsearch --uchime_denovo res/1550052794.82_3873_03.fasta.tmp --nonchimeras res/1550052794.82_3873_03.fasta --uchimeout res/1550052794.82_3873_03.fasta.log
##Results
sample_name: 03
nb_chimera: 3
chimera_abun: 3
max_chimera_abun: 1
nb_non_chimera: 14899
non_chimera_abun: 29997


## Removes the chimera observation from BIOM.