view test-data/references/11-affiliation_std.biom @ 0:59bc96331073 draft default tip

planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647

{"rows": [{"id": "Cluster_1", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Hymenochaetales", "f__Hymenochaetaceae", "g__Hymenochaete", "s__Hymenochaete_longispora"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Hymenochaetales;f__Hymenochaetaceae;g__Hymenochaete;s__Hymenochaete_longispora", "seed_id": "01_58367"}}, {"id": "Cluster_2", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Russulales", "f__Russulaceae", "g__Lactarius", "s__Lactarius_cyathuliformis"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Russulales;f__Russulaceae;g__Lactarius;s__Lactarius_cyathuliformis", "seed_id": "01_57964"}}, {"id": "Cluster_3", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Pezizomycetes", "o__Pezizales", "f__Pezizaceae", "g__Terfezia", "s__Terfezia_claveryi"], "blast_taxonomy": 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"metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Russulales", "f__Russulaceae", "g__Lactarius", "s__Lactarius_sp"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Russulales;f__Russulaceae;g__Lactarius;s__Lactarius_sp", "seed_id": "01_71178"}}, {"id": "Cluster_18", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Thelephorales", "f__Bankeraceae", "g__Sarcodon", "s__Sarcodon_quercophilus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Thelephorales;f__Bankeraceae;g__Sarcodon;s__Sarcodon_quercophilus", "seed_id": "01_75"}}, {"id": "Cluster_19", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Psathyrellaceae", "g__Coprinopsis", "s__Coprinopsis_pachyderma"], "blast_taxonomy": 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"Root;k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Elaphomycetaceae;g__Elaphomyces;s__Elaphomyces_compleximurus", "seed_id": "01_59"}}, {"id": "Cluster_25", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_sinapivelus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_sinapivelus", "seed_id": "01_165"}}, {"id": "Cluster_26", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Entolomataceae", "g__Entoloma", "s__Entoloma_sp"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Entolomataceae;g__Entoloma;s__Entoloma_sp", "seed_id": "01_75264"}}, {"id": "Cluster_27", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Hypocreales", "f__Hypocreaceae", "g__Trichoderma", "s__Trichoderma_rodmanii"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Hypocreaceae;g__Trichoderma;s__Trichoderma_rodmanii", "seed_id": "01_40"}}, {"id": "Cluster_28", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Strophariaceae", "g__Pholiota", "s__Pholiota_highlandensis"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Strophariaceae;g__Pholiota;s__Pholiota_highlandensis", "seed_id": "01_90154"}}, {"id": "Cluster_29", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Boletales", "f__Suillaceae", "g__Truncocolumella", "s__Truncocolumella_rubra"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Boletales;f__Suillaceae;g__Truncocolumella;s__Truncocolumella_rubra", "seed_id": "01_102"}}, {"id": "Cluster_30", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_caesiocolor"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_caesiocolor", "seed_id": "01_30455"}}, {"id": "Cluster_31", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_gentianeus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_gentianeus", "seed_id": "01_87"}}, {"id": "Cluster_32", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Tricholomataceae", "g__Gamundia", "s__Gamundia_leucophylla"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Tricholomataceae;g__Gamundia;s__Gamundia_leucophylla", "seed_id": "01_11"}}, {"id": "Cluster_33", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Tricholomataceae", "g__Tricholoma", "s__Tricholoma_portentosum"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Tricholomataceae;g__Tricholoma;s__Tricholoma_portentosum", "seed_id": "01_443"}}, {"id": "Cluster_34", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Xylariales", "f__Amphisphaeriaceae", "g__Adisciso", "s__Adisciso_tricellulare"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Xylariales;f__Amphisphaeriaceae;g__Adisciso;s__Adisciso_tricellulare", "seed_id": "01_75598"}}, {"id": "Cluster_35", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", 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"Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_calojanthinus", "seed_id": "01_73924"}}, {"id": "Cluster_38", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_amnicola"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_amnicola", "seed_id": "01_324"}}, {"id": "Cluster_39", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Psathyrellaceae", "g__Psathyrella", "s__Psathyrella_sublatispora"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Psathyrellaceae;g__Psathyrella;s__Psathyrella_sublatispora", "seed_id": "01_35137"}}, {"id": "Cluster_40", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", 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"Cluster_48_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Xylariales", "f__Amphisphaeriaceae", "g__Pestalotiopsis", "s__Pestalotiopsis_diversiseta"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Xylariales;f__Amphisphaeriaceae;g__Pestalotiopsis;s__Pestalotiopsis_diversiseta", "seed_id": "01_54177_FROGS_combined"}}, {"id": "Cluster_49", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Eurotiomycetes", "o__Eurotiales", "f__Trichocomaceae", "g__Aspergillus", "s__Aspergillus_caninus"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Aspergillus;s__Aspergillus_caninus", "seed_id": "01_97871"}}, {"id": "Cluster_50", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_parkeri"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_parkeri", "seed_id": "01_49457"}}, {"id": "Cluster_51", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Thelephorales", "f__Bankeraceae", "g__Hydnellum", "s__Hydnellum_suaveolens"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Thelephorales;f__Bankeraceae;g__Hydnellum;s__Hydnellum_suaveolens", "seed_id": "01_53983"}}, {"id": "Cluster_52", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Dothideomycetes", "o__Pleosporales", "f__Leptosphaeriaceae", "g__Leptosphaeria", "s__Leptosphaeria_polylepidis"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Leptosphaeriaceae;g__Leptosphaeria;s__Leptosphaeria_polylepidis", "seed_id": "01_4137"}}, {"id": "Cluster_53", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Eurotiomycetes", "o__Eurotiales", "f__Trichocomaceae", "g__Aspergillus", "s__Aspergillus_microcysticus"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Aspergillus;s__Aspergillus_microcysticus", "seed_id": "01_55980"}}, {"id": "Cluster_54", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Thelephorales", "f__Thelephoraceae", "g__Thelephora", "s__Thelephora_atra"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Thelephorales;f__Thelephoraceae;g__Thelephora;s__Thelephora_atra", "seed_id": "01_10600"}}, {"id": "Cluster_55", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Hypocreales", "f__Hypocreaceae", "g__Trichoderma", "s__Trichoderma_rhododendri"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Hypocreaceae;g__Trichoderma;s__Trichoderma_rhododendri", "seed_id": "01_1077"}}, {"id": "Cluster_56", "metadata": {"comment": "na", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Amanitaceae", "g__Amanita", "s__Amanita_friabilis"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Amanitaceae;g__Amanita;s__Amanita_friabilis", "seed_id": "01_85648"}}, {"id": "Cluster_58_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Cortinarius", "s__Cortinarius_calojanthinus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Cortinarius;s__Cortinarius_calojanthinus", "seed_id": "01_91453_FROGS_combined"}}, {"id": "Cluster_59_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Thelephorales", "f__Bankeraceae", "g__Hydnellum", "s__Hydnellum_peckii"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Thelephorales;f__Bankeraceae;g__Hydnellum;s__Hydnellum_peckii", "seed_id": "01_39317_FROGS_combined"}}, {"id": "Cluster_116_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Inocybaceae", "g__Inocybe", "s__Inocybe_sindonia"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Inocybaceae;g__Inocybe;s__Inocybe_sindonia", "seed_id": "01_67228_FROGS_combined"}}, {"id": "Cluster_119_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Hypocreales", "f__Hypocreaceae", "g__Trichoderma", "s__Trichoderma_aggressivum"], "blast_taxonomy": 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"metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Psathyrellaceae", "g__Coprinopsis", "s__Coprinopsis_pachyderma"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Psathyrellaceae;g__Coprinopsis;s__Coprinopsis_pachyderma", "seed_id": "01_69104_FROGS_combined"}}, {"id": "Cluster_582_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Diaporthales", "f__Togniniaceae", "g__Phaeoacremonium", "s__Phaeoacremonium_rubrigenum"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Diaporthales;f__Togniniaceae;g__Phaeoacremonium;s__Phaeoacremonium_rubrigenum", "seed_id": "01_69762_FROGS_combined"}}, {"id": "Cluster_626_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Cortinariaceae", "g__Phaeocollybia", "s__Phaeocollybia_kauffmanii"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Cortinariaceae;g__Phaeocollybia;s__Phaeocollybia_kauffmanii", "seed_id": "01_70002_FROGS_combined"}}, {"id": "Cluster_875_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Boletales", "f__Boletaceae", "g__Xerocomus", "s__Xerocomus_porophyllus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Boletales;f__Boletaceae;g__Xerocomus;s__Xerocomus_porophyllus", "seed_id": "01_71488_FROGS_combined"}}, {"id": "Cluster_1179_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", "c__Sordariomycetes", "o__Hypocreales", "f__Hypocreaceae", "g__Trichoderma", "s__Trichoderma_mienum"], "blast_taxonomy": "Root;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Hypocreaceae;g__Trichoderma;s__Trichoderma_mienum", "seed_id": "01_73097_FROGS_combined"}}, {"id": "Cluster_1253_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Russulales", "f__Russulaceae", "g__Lactarius", "s__Lactarius_semisanguifluus"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Russulales;f__Russulaceae;g__Lactarius;s__Lactarius_semisanguifluus", "seed_id": "01_73444_FROGS_combined"}}, {"id": "Cluster_1482_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Basidiomycota", "c__Agaricomycetes", "o__Agaricales", "f__Tricholomataceae", "g__Tricholoma", "s__Tricholoma_portentosum"], "blast_taxonomy": "Root;k__Fungi;p__Basidiomycota;c__Agaricomycetes;o__Agaricales;f__Tricholomataceae;g__Tricholoma;s__Tricholoma_portentosum", "seed_id": "01_16078_FROGS_combined"}}, {"id": "Cluster_1736_FROGS_combined", "metadata": {"comment": "WARNING", "taxonomy": ["Root", "k__Fungi", "p__Ascomycota", 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