Mercurial > repos > fubar > jbrowse2
comparison jbrowse2.xml @ 36:5f39f745682f draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 80b849766a962bac4bd0bb8cb69c118cc42699cd-dirty
| author | fubar |
|---|---|
| date | Thu, 29 Feb 2024 00:47:58 +0000 |
| parents | 15da358c3108 |
| children | 07849bf248e3 |
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| 35:15da358c3108 | 36:5f39f745682f |
|---|---|
| 138 #end if | 138 #end if |
| 139 | 139 |
| 140 <options> | 140 <options> |
| 141 | 141 |
| 142 #if str($track.data_format.data_format_select) == "bam": | 142 #if str($track.data_format.data_format_select) == "bam": |
| 143 <pileup> | 143 <bam> |
| 144 #for $dataset in $track.data_format.annotation: | 144 #for $dataset in $track.data_format.annotation: |
| 145 <bam_index>${dataset.metadata.bam_index}</bam_index> | 145 <bam_index>${dataset.metadata.bam_index}</bam_index> |
| 146 #end for | 146 #end for |
| 147 </pileup> | 147 </bam> |
| 148 #else if str($track.data_format.data_format_select) == "cram": | 148 #else if str($track.data_format.data_format_select) == "cram": |
| 149 <cram> | 149 <cram> |
| 150 <cram_indices> | 150 <cram_indices> |
| 151 #for $dataset in $track.data_format.annotation: | 151 #for $dataset in $track.data_format.annotation: |
| 152 <cram_index>${dataset.metadata.cram_index}</cram_index> | 152 <cram_index>${dataset.metadata.cram_index}</cram_index> |