Mercurial > repos > fubar > jbrowse2

comparison test-data/gff3/merlin.gff3 @ 57:94264fe60478 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 4b5df41484f6bdf316edaf95b53c92d328ec1674-dirty
author fubar
date Thu, 21 Mar 2024 08:01:42 +0000
parents 4181e97c70a7
children
comparison
equal deleted inserted replaced
56:c0097a584a8a 57:94264fe60478
1 ##gff-version 3 1 ##gff-version3
2 ##sequence-region Merlin 1 172788 2 ##sequence-region Merlin 1 172788
3 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin 3 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin
4 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1 4 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1
5 Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA 5 Merlin GeneMark.hmm CDS14 20 1000 + 0 ID=Merlin_1_CDS;Parent=Merlin_1_mRNA
6 Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA 6 Merlin GeneMark.hmm CDS24 30 500+ 0 ID=Merlin_1_CDS;Parent=Merlin_1_mRNA
7 Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00 7 Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00
8 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2 8 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2
9 Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff 9 Merlin GeneMark.hmm CDS14 20 500+ 0 ID=Merlin_2_CDS;Parent=Merlin_2_mRNA;color=#0000ff
10 Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00 10 Merlin GeneMark.hmm CDS24 30 750+ 0 ID=Merlin_2_CDS;Parent=Merlin_2_mRNA;color=#00ff00
11 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin 11 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin
12 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff 12 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff
13 Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff 13 Merlin GeneMark.hmm CDS14 18 1000 + 0 ID=Merlin_3A_CDS;Parent=Merlin_3A_mRNA;color=#0000ff
14 Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff 14 Merlin GeneMark.hmm CDS20 30 800+ 0 ID=Merlin_3A_CDS;Parent=Merlin_3A_mRNA;color=#0000ff
15 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff 15 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff
16 Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff 16 Merlin GeneMark.hmm CDS14 22 400+ 0 ID=Merlin_3B_CDS;Parent=Merlin_3B_mRNA;color=#0000ff
17 Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff 17 Merlin GeneMark.hmm CDS24 30 1000 + 0 ID=Merlin_3B_CDS;Parent=Merlin_3B_mRNA;color=#0000ff
18 Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1 18 Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Genewithtwosplicingmodels;ID=1
19 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1; 19 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNAAwithbothCDSsandUTRs;ID=1A;Parent=1;
20 Merlin exonerate UTR 1740 1799 . + . Parent=1A 20 # {
21 Merlin exonerate CDS 1900 2080 . + 0 Parent=1A 21 # "baseUrl":"http://localhost:8000/out/data/"
22 Merlin exonerate CDS 2100 2120 . + 2 Parent=1A 22 # "compress":0,
23 Merlin exonerate UTR 2120 2300 . + . Parent=1A 23 # "label":"Transcript",
24 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1; 24 # "storeClass":"JBrowse/Store/SeqFeature/NCList",
25 Merlin exonerate UTR 1740 1799 . + . Parent=1B 25 # "trackType":"JBrowse/View/Track/CanvasFeatures",
26 Merlin exonerate CDS 1800 1880 . + 0 Parent=1B 26 # "type":"JBrowse/View/Track/CanvasFeatures",
27 Merlin exonerate CDS 1900 1950 . + 1 Parent=1B 27 # "urlTemplate":"tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
28 Merlin exonerate CDS 2100 2120 . + 2 Parent=1B 28 # }
29 Merlin exonerate UTR 2120 2300 . + . Parent=1B
30 # {
31 # "baseUrl": "http://localhost:8000/out/data/"
32 # "compress": 0,
33 # "label": "Transcript",
34 # "storeClass": "JBrowse/Store/SeqFeature/NCList",
35 # "trackType": "JBrowse/View/Track/CanvasFeatures",
36 # "type": "JBrowse/View/Track/CanvasFeatures",
37 # "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
38 # }