Mercurial > repos > fubar > jbrowse2
diff test-data/gff3/merlin.gff3 @ 57:94264fe60478 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 4b5df41484f6bdf316edaf95b53c92d328ec1674-dirty
| author | fubar |
|---|---|
| date | Thu, 21 Mar 2024 08:01:42 +0000 |
| parents | 4181e97c70a7 |
| children |
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--- a/test-data/gff3/merlin.gff3 Tue Mar 19 02:33:40 2024 +0000 +++ b/test-data/gff3/merlin.gff3 Thu Mar 21 08:01:42 2024 +0000 @@ -1,38 +1,28 @@ -##gff-version 3 -##sequence-region Merlin 1 172788 -Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin -Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1 -Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA -Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA -Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00 -Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2 -Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff -Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00 -Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin -Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff -Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff -Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff -Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff -Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff -Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff -Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1 -Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1; -Merlin exonerate UTR 1740 1799 . + . Parent=1A -Merlin exonerate CDS 1900 2080 . + 0 Parent=1A -Merlin exonerate CDS 2100 2120 . + 2 Parent=1A -Merlin exonerate UTR 2120 2300 . + . Parent=1A -Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1; -Merlin exonerate UTR 1740 1799 . + . Parent=1B -Merlin exonerate CDS 1800 1880 . + 0 Parent=1B -Merlin exonerate CDS 1900 1950 . + 1 Parent=1B -Merlin exonerate CDS 2100 2120 . + 2 Parent=1B -Merlin exonerate UTR 2120 2300 . + . Parent=1B -# { -# "baseUrl": "http://localhost:8000/out/data/" -# "compress": 0, -# "label": "Transcript", -# "storeClass": "JBrowse/Store/SeqFeature/NCList", -# "trackType": "JBrowse/View/Track/CanvasFeatures", -# "type": "JBrowse/View/Track/CanvasFeatures", -# "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json", -# } +##gff-version3 +##sequence-region Merlin 1 172788 +Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1 +Merlin GeneMark.hmm CDS14 20 1000 + 0 ID=Merlin_1_CDS;Parent=Merlin_1_mRNA +Merlin GeneMark.hmm CDS24 30 500+ 0 ID=Merlin_1_CDS;Parent=Merlin_1_mRNA +Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00 +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2 +Merlin GeneMark.hmm CDS14 20 500+ 0 ID=Merlin_2_CDS;Parent=Merlin_2_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS24 30 750+ 0 ID=Merlin_2_CDS;Parent=Merlin_2_mRNA;color=#00ff00 +Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff +Merlin GeneMark.hmm CDS14 18 1000 + 0 ID=Merlin_3A_CDS;Parent=Merlin_3A_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS20 30 800+ 0 ID=Merlin_3A_CDS;Parent=Merlin_3A_mRNA;color=#0000ff +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff +Merlin GeneMark.hmm CDS14 22 400+ 0 ID=Merlin_3B_CDS;Parent=Merlin_3B_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS24 30 1000 + 0 ID=Merlin_3B_CDS;Parent=Merlin_3B_mRNA;color=#0000ff +Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Genewithtwosplicingmodels;ID=1 +Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNAAwithbothCDSsandUTRs;ID=1A;Parent=1; +# { +# "baseUrl":"http://localhost:8000/out/data/" +# "compress":0, +# "label":"Transcript", +# "storeClass":"JBrowse/Store/SeqFeature/NCList", +# "trackType":"JBrowse/View/Track/CanvasFeatures", +# "type":"JBrowse/View/Track/CanvasFeatures", +# "urlTemplate":"tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json", +# }