Mercurial > repos > fubar > jbrowse2

comparison test-data/maf/merlin.maf @ 61:e7a6f7a7148d draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 6dde5ad41d63730085116ab2c9a9d3e500a760e4-dirty
author fubar
date Tue, 26 Mar 2024 00:52:34 +0000
parents d78175596286
children
comparison
equal deleted inserted replaced
60:81d535970196 61:e7a6f7a7148d
1 ##maf version=1 scoring=lastz.v1.04.22 1 ##maf version=1 scoring=lastz.v1.04.22
2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple 2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
3 # 3 #
4 # hsp_threshold = 3000 4 # hsp_threshold = 3000
5 # gapped_threshold = 3000 5 # gapped_threshold = 3000
6 # x_drop = 910 6 # x_drop = 910
7 # y_drop = 9400 7 # y_drop = 9400
8 # gap_open_penalty = 400 8 # gap_open_penalty = 400
9 # gap_extend_penalty = 30 9 # gap_extend_penalty = 30
10 # A C G T 10 # A C G T
11 # A 91 -114 -31 -123 11 # A 91 -114 -31 -123
12 # C -114 100 -125 -31 12 # C -114 100 -125 -31
13 # G -31 -125 100 -114 13 # G -31 -125 100 -114
14 # T -123 -31 -114 91 14 # T -123 -31 -114 91
15
15 a score=5613 16 a score=5613
16 s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT 17 s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT
17 s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT 18 s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT
19
18 a score=5667 20 a score=5667
19 s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA 21 s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
20 s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA 22 s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA
23
21 a score=5721 24 a score=5721
22 s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC 25 s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
23 s merlin3.Merlin 0 60 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC 26 s merlin3.Merlin 100 160 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC
27
24 a score=5613 28 a score=5613
25 s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA 29 s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
26 s merlin4.Merlin 0 60 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA 30 s merlin4.Merlin 200 260 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA
31
27 a score=5703 32 a score=5703
28 s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG 33 s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
29 s merlin5.Merlin 0 60 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG 34 s merlin5.Merlin 300 360 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG
35
30 a score=5649 36 a score=5649
31 s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT 37 s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
32 s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAA TGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT 38 s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAATGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT