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diff test-data/maf/merlin.maf @ 61:e7a6f7a7148d draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 6dde5ad41d63730085116ab2c9a9d3e500a760e4-dirty
author fubar
date Tue, 26 Mar 2024 00:52:34 +0000
parents d78175596286
children
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--- a/test-data/maf/merlin.maf	Mon Mar 25 02:10:05 2024 +0000
+++ b/test-data/maf/merlin.maf	Tue Mar 26 00:52:34 2024 +0000
@@ -1,32 +1,38 @@
 ##maf version=1 scoring=lastz.v1.04.22
 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
 #
-# hsp_threshold      = 3000
-# gapped_threshold   = 3000
-# x_drop             = 910
-# y_drop             = 9400
-# gap_open_penalty   = 400
+# hsp_threshold = 3000
+# gapped_threshold = 3000
+# x_drop = 910
+# y_drop = 9400
+# gap_open_penalty = 400
 # gap_extend_penalty = 30
-#        A    C    G    T
-#   A   91 -114  -31 -123
-#   C -114  100 -125  -31
-#   G  -31 -125  100 -114
-#   T -123  -31 -114   91
+# A C G T
+# A 91 -114 -31 -123
+# C -114 100 -125 -31
+# G -31 -125 100 -114
+# T -123 -31 -114 91
+
 a score=5613
 s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT
-s merlin1.Merlin   960 60 +     60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT
+s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT
+
 a score=5667
-s Merlin.Merlin  1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
-s merlin2.Merlin    0 60 +     60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA
+s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
+s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA
+
 a score=5721
-s Merlin.Merlin  1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
-s merlin3.Merlin    0 60 +     60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC
+s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
+s merlin3.Merlin 100 160 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC
+
 a score=5613
-s Merlin.Merlin  1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
-s merlin4.Merlin    0 60 +     60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA
+s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
+s merlin4.Merlin 200 260 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA
+
 a score=5703
-s Merlin.Merlin  1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
-s merlin5.Merlin    0 60 +     60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG
+s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
+s merlin5.Merlin 300 360 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG
+
 a score=5649
-s Merlin.Merlin  1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
-s merlin6.Merlin    0 60 +     60 TTTGCATTACTCTGTAAGCAA TGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT
+s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
+s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAATGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT