Mercurial > repos > fubar > jbrowse2

diff autogenJB2.py @ 38:07849bf248e3 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit a74e469a81b38c7142f63de510ae31d3754d1767
author fubar
date Fri, 01 Mar 2024 00:40:38 +0000
parents 5f39f745682f
children bc57164eb270
line wrap: on
line diff
--- a/autogenJB2.py	Thu Feb 29 00:51:45 2024 +0000
+++ b/autogenJB2.py	Fri Mar 01 00:40:38 2024 +0000
@@ -109,9 +109,9 @@
                             }
                         }
                 elif trext == 'bam':
-                     track_conf = {"conf": {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}}}
+                     track_conf = {"conf": {"options": {"bam": {"bam_index": track[3]}}}}
                 elif trext == 'cram':
-                     track_conf = {"conf": {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}}}
+                     track_conf = {"conf": {"options": {"cram": {"cram_index": track[3]}}}}
                 else:
                     track_conf = {}
                 track_conf["format"] = trext