Mercurial > repos > fubar > jbrowse2
changeset 40:e1a3d3221ed3 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78
| author | fubar |
|---|---|
| date | Fri, 01 Mar 2024 02:22:44 +0000 |
| parents | bc57164eb270 |
| children | 3e7a4ed46551 |
| files | autogenJB2.xml jbrowse2.xml |
| diffstat | 2 files changed, 4 insertions(+), 18 deletions(-) [+] |
line wrap: on
line diff
--- a/autogenJB2.xml Fri Mar 01 01:03:09 2024 +0000 +++ b/autogenJB2.xml Fri Mar 01 02:22:44 2024 +0000 @@ -66,15 +66,12 @@ </tests> <help><![CDATA[ -JBrowse2-in-Galaxy -================== +Autogenerated JBrowse2 +====================== -JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible -alternative to JBrowse1-in-Galaxy and Trackster. +Given a collection of datatypes suited for making JB2 tracks, this tool will create a working JBrowse2 configuration. +A paf track requires a nested collection with the paf file and all the genomes used in creating it. -Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes, -and detailed track styling is not yet implemented. Send code. -JBrowse1 development has now ceased in favour of JBrowse2. Use and local viewing ===================== @@ -109,10 +106,6 @@ The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC <https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer. -It is maintained by https://github.com/fubar2 who you can help you -with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic, -and disturbed by the distinctly coercive approach to introducing new code, -compared to the more usual method of providing a working PR. Options -------
--- a/jbrowse2.xml Fri Mar 01 01:03:09 2024 +0000 +++ b/jbrowse2.xml Fri Mar 01 02:22:44 2024 +0000 @@ -762,13 +762,6 @@ about how to run the command line tools to format your data, and which options need to be supplied and where. -The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC -<https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer. -It is maintained by https://github.com/fubar2 who you can help you -with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic, -and disturbed by the distinctly coercive approach to introducing new code, -compared to the more usual method of providing a working PR. - Options -------