Mercurial > repos > fubar > lifelines_km_cph_tool
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author | fubar |
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date | Wed, 09 Aug 2023 11:12:16 +0000 |
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# lifelines_tool - lifelines statistical package wrapped as a Galaxy tool. ## Galaxy tool to run failure time models using lifelines ## Install to your Galaxy server from the toolshed - search for lifelines_tool owned by fubar2 ### More at https://lazarus.name/demo/ #### Using the Rossi sample input data from lifelines, tool outputs include: ![KM plot sample](lifelines_rossi_km.png) and ![KM plot sample](lifelines_rossi_schoenfeld.png) and ![KM plot sample](lifelines_report.png) Runs Kaplan-Meier and generates a plot. Optional grouping variable. If 2 groups, runs a log-rank test for difference. Plots show confidence intervals If a list of covariate column names is provided, these are used in a Cox Proportional Hazards model with tests for proportionality. Should work with any tabular data with the required columns - time and status for observations. Issues to https://github.com/fubar2/lifelines_tool please. Autogenerated so pull requests are possibly meaningless but regeneration of a new version is easy so please tell me what is needed. ## Tool made with the Galaxy ToolFactory: https://github.com/fubar2/galaxy_tf_overlay The current release includes this and a generic tabular version, and a java .jar wrapper in a history where the generating ToolFactory form can be recreated using the redo button. Editing the tool id will make a new tool, so all other edits to parameters can be made and the new tool generated without destroying the original sample.