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1 # lifelines_tool - lifelines statistical package wrapped as a Galaxy tool.
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2
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3 ## Galaxy tool to run failure time models using lifelines
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4
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5 ## Install to your Galaxy server from the toolshed - search for lifelines_tool owned by fubar2
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6
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7 ### More at https://lazarus.name/demo/
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8
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9 #### Using the Rossi sample input data from lifelines, tool outputs include:
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10
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11 
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12 and
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13 
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14 and
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15 
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18 Runs Kaplan-Meier and generates a plot. Optional grouping variable.
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19 If 2 groups, runs a log-rank test for difference.
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20 Plots show confidence intervals
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21
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22 If a list of covariate column names is provided, these are used in a
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23 Cox Proportional Hazards model with tests for proportionality.
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24
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25 Should work with any tabular data with the required columns - time and status for observations.
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26
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27 Issues to https://github.com/fubar2/lifelines_tool please.
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28 Autogenerated so pull requests are possibly meaningless but regeneration of a new version is easy so please tell me what is needed.
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29
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30 ## Tool made with the Galaxy ToolFactory: https://github.com/fubar2/galaxy_tf_overlay
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31 The current release includes this and a generic tabular version, and a java .jar wrapper in a history where the generating
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32 ToolFactory form can be recreated using the redo button. Editing the tool id will make a new tool, so all other edits to parameters can be
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33 made and the new tool generated without destroying the original sample.
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