comparison find_str.py @ 17:264d79548d19 draft

planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty

16:ee773bbde3c3

    for name, seq in fa:
        if args.specific:
            ssrs = pytrf.STRFinder(
                name,
                seq,
                2,
                1,
                2,
                2,
                2,
                2,
            )
        else:
            ssrs = pytrf.STRFinder(
                name,
                seq,

17:264d79548d19

    for name, seq in fa:
        if args.specific:
            ssrs = pytrf.STRFinder(
                name,
                seq,
                args.monomin,
                args.dimin,
                args.trimin,
                args.tetramin,
                args.pentamin,
                args.hexamin,
            )
        else:
            ssrs = pytrf.STRFinder(
                name,
                seq,