Mercurial > repos > fubar > microsatbed
changeset 18:607620f93b4c draft
planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty
| author | fubar |
|---|---|
| date | Wed, 17 Jul 2024 06:19:22 +0000 |
| parents | 264d79548d19 |
| children | db5523378e5c |
| files | README.md microsatbed.xml |
| diffstat | 2 files changed, 8 insertions(+), 13 deletions(-) [+] |
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--- a/README.md Wed Jul 17 06:08:33 2024 +0000 +++ b/README.md Wed Jul 17 06:19:22 2024 +0000 @@ -1,4 +1,5 @@ ## microsatellites to bed features + **Convert short repetitive sequences to bed features** Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence. @@ -49,4 +50,4 @@ Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs. It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats* - + \ No newline at end of file
--- a/microsatbed.xml Wed Jul 17 06:08:33 2024 +0000 +++ b/microsatbed.xml Wed Jul 17 06:19:22 2024 +0000 @@ -26,12 +26,6 @@ --bed '$bed' #if $mode_cond.mode == "SPECIFIC": --specific '$mode_cond.specific' - --monomin '$monomin' - --dimin '$dimin' - --trimin '$trimin' - --tetramin '$tetramin' - --pentamin '$pentamin' - --hexamin '$hexamin' #else: #if "MONO" in $mode_cond.subset: --mono @@ -51,13 +45,13 @@ #if "HEXA" in $mode_cond.subset: --hexa #end if - --monomin '$monomin' - --dimin '$dimin' - --trimin '$trimin' - --tetramin '$tetramin' - --pentamin '$pentamin' - --hexamin '$hexamin' #end if + --monomin '$monomin' + --dimin '$dimin' + --trimin '$trimin' + --tetramin '$tetramin' + --pentamin '$pentamin' + --hexamin '$hexamin' #end if ]]></command> <inputs>