annotate README.md @ 0:c34063ab3735 draft

Initial commit of code in iuc github repository
author fubar
date Thu, 01 Jan 2015 21:58:00 -0500
parents
children dd6cf2ddaac7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
1 toolfactory_2
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
2 =============
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
3
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
4 This is an upgrade to the tool factory but with added parameters
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
5 (optionally editable in the generated tool form - otherwise fixed) and multiple input files.
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
6
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
7 Any number of parameters up to the limit of your patience with repeat groups
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
8 These are optionally editable by the user - names cannot be changed - no overwriting $JAVA_HOME_DIR
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
9 or else permanently fixed and not editable at run time.
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
10
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
11 Any number of input files can be passed to your script, but of course it
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
12 has to deal with them. Both path and metadata name are supplied either in the environment (bash/sh) or
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
13 as command line parameters (python,perl,rscript) that need to be parsed and
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
14 dealt with in the script.
c34063ab3735 Initial commit of code in iuc github repository
fubar
parents:
diff changeset
15