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1 <!DOCTYPE html>
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2 <html lang="en">
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3 <head>
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4 <meta charset="utf-8">
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5 <link rel="stylesheet" href="/static/style/base.css" type="text/css" />
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6 </head>
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7 <body style="margin: 0">
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8
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9 <div class="jumbotron">
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10 <div class="container">
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11 <table><tr><td>
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12 <h2>Hello, your <strong>Galaxy ToolFactory Docker</strong> container is running!</h2>
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13 <strong>If you have not already done so, </strong>
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14 From a handy linux console, please use <br>
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15 <code>docker ps</code><br>
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16 to find this container's name then use<br>
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17 <code>docker exec [container name] config/post-start-actions.sh</code>
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18 <br>
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19 to load the sample tool generators to fully populate this container.
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20 until the Dockerfile for this container figures out how to load a workflow during the build correctly.<br>
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21 To run the workflow you need two small datasets until I get them loaded<br>
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22 phiX.fasta from the Galaxy test-sample directory, and any smallish text file you want such as a readme or script.<br>
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23 When you run the workflow, feed the fasta where it says, and the text file where you see rgToolFactory.py<br>
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24 Send it to the same history and let it run.<br>
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25 With any luck, you will have a history of examples to play with - use the rerun button to repopulate the ToolFactory form to illustrate<br>
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26 positional and argparse style parameter passing for python, a simple bash script using STDIN/STDOUT and the perl (ugh) example from planemo<br>
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27 <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Config" class="btn btn-primary btn-lg">Configuring Galaxy »</a>
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28 <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial" class="btn btn-primary btn-lg">Installing Tools »</a>
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29 <a target="_parent" href="/tours/core.galaxy_ui" class="btn btn-primary btn-lg">Guided Tour »</a>
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30 </td><td>
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31 <div align=center>
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32 <img src="./welcome_image.png" width="90%" height="90%" />
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33 </div>
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34
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35 </td></tr></table>
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36 </div>
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37 </div>
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38
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39 <div class="container">
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40
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41 <p class="lead">
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42 <a target="_blank" class="reference" href="http://galaxyproject.org/">
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43 Galaxy</a> is an open platform for supporting data intensive
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44 research. Galaxy is developed by <a target="_blank" class="reference" href="http://wiki.galaxyproject.org/GalaxyTeam">The Galaxy Team</a>
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45 with the support of <a target="_blank" class="reference" href="https://github.com/galaxyproject/galaxy/blob/dev/CONTRIBUTORS.md">many contributors</a>.
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46 The Galaxy Docker project is supported by the University of Freiburg, part of de.NBI.
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47 </p>
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48
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49 <footer>
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50 The <a target="_blank" class="reference" href="http://galaxyproject.org/">Galaxy Project</a>
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51 is supported in part by <a target="_blank" class="reference" href="http://www.genome.gov">NHGRI</a>,
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52 <a target="_blank" class="reference" href="http://www.nsf.gov">NSF</a>,
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53 <a target="_blank" class="reference" href="http://www.huck.psu.edu">The Huck Institutes of the Life Sciences</a>,
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54 <a target="_blank" class="reference" href="http://www.ics.psu.edu">The Institute for CyberScience at Penn State</a>,
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55 and <a target="_blank" class="reference" href="http://www.jhu.edu/">Johns Hopkins University</a>.
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56 </footer>
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57
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58 </div>
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59
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60 </body>
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61 </html>
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