annotate macros.xml @ 0:234b3e869b16 draft default tip

"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
author galaxy-australia
date Wed, 26 Oct 2022 06:54:04 +0000
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234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
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1 <macros>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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2 <xml name="requirements">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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3 <requirements>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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4 <requirement type="package" version="1.1.1">blobtools</requirement>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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5 <requirement type="package" version="3.2.2">matplotlib</requirement>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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6 </requirements>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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7 </xml>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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8 <xml name="stdio">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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9 <stdio>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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10 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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11 <exit_code range="1:" level="fatal" description="Error" />
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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12 </stdio>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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13 </xml>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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14 <xml name="version_command">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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15 <version_command><![CDATA[
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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16 blobtools --version 2>&1 | head -1
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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17 ]]></version_command>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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18 </xml>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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19 <xml name="macro_create_input">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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20 <param name="input_fasta" type="data" format="fasta" label="Sequence file"/>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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21 <param name="input_bam" type="data" format="bam" label="Alignment file"/>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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22 <param name="input_blast" type="data" format="tabular" label="Simplified Blast file"/>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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23 </xml>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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24 <xml name="macro_view_input">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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25 <param name="input_json" type="data" format="json" label="Json input file"/>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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26 </xml>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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27 <token name="@SET_TMP_DIR@">
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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28 export MPLCONFIGDIR="/tmp"
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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29 </token>
234b3e869b16 "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
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30 </macros>