Mercurial > repos > galaxy-australia > blobtools
annotate macros.xml @ 0:234b3e869b16 draft default tip
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
author | galaxy-australia |
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date | Wed, 26 Oct 2022 06:54:04 +0000 |
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234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
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1 <macros> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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2 <xml name="requirements"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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3 <requirements> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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4 <requirement type="package" version="1.1.1">blobtools</requirement> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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5 <requirement type="package" version="3.2.2">matplotlib</requirement> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
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6 </requirements> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
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7 </xml> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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8 <xml name="stdio"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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9 <stdio> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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changeset
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10 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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11 <exit_code range="1:" level="fatal" description="Error" /> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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12 </stdio> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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13 </xml> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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14 <xml name="version_command"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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15 <version_command><![CDATA[ |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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16 blobtools --version 2>&1 | head -1 |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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17 ]]></version_command> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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18 </xml> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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19 <xml name="macro_create_input"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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20 <param name="input_fasta" type="data" format="fasta" label="Sequence file"/> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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21 <param name="input_bam" type="data" format="bam" label="Alignment file"/> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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22 <param name="input_blast" type="data" format="tabular" label="Simplified Blast file"/> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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23 </xml> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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24 <xml name="macro_view_input"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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25 <param name="input_json" type="data" format="json" label="Json input file"/> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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26 </xml> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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27 <token name="@SET_TMP_DIR@"> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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28 export MPLCONFIGDIR="/tmp" |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
diff
changeset
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29 </token> |
234b3e869b16
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/blobtools commit 89d41433582a6470135c026aad07b714eb3145d4"
galaxy-australia
parents:
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30 </macros> |