annotate macros.xml @ 2:800f8086da7d draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
author iuc
date Tue, 30 Apr 2024 08:38:15 +0000
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800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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1 <macro>
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2 <xml name="reference_genome_input">
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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3 <conditional name="reference_genome">
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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4 <param name="source" type="select" label="Source for the reference genome" help="Built-in references were created using default options.">
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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5 <option value="indexed" selected="true">Use a built-in genome</option>
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6 <option value="history">Use a genome from history</option>
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7 </param>
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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8 <when value="indexed">
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9 <param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact the Galaxy team.">
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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10 <options from_data_table="fasta_indexes">
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11 <filter type="sort_by" column="2" />
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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12 <validator type="no_options" message="No genomes are available for the selected input dataset" />
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13 </options>
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14 </param>
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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15 </when>
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16 <when value="history">
800f8086da7d planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
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17 <param name="fasta" type="data" format="fasta,fasta.gz"
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18 label="Reference genome fasta file"
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19 help="The reference genome is required for long-read optimization."
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20 />
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21 </when>
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22 </conditional>
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23 </xml>
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25 <xml name="creator">
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26 <creator>
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27 <organization name="Galaxy Australia" url="https://site.usegalaxy.org.au"/>
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28 </creator>
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29 </xml>
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30 </macro>