Mercurial > repos > galaxy-australia > hapcut2
annotate macros.xml @ 2:800f8086da7d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
author | iuc |
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date | Tue, 30 Apr 2024 08:38:15 +0000 |
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800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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1 <macro> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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2 <xml name="reference_genome_input"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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3 <conditional name="reference_genome"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
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4 <param name="source" type="select" label="Source for the reference genome" help="Built-in references were created using default options."> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
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5 <option value="indexed" selected="true">Use a built-in genome</option> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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6 <option value="history">Use a genome from history</option> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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7 </param> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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8 <when value="indexed"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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9 <param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact the Galaxy team."> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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10 <options from_data_table="fasta_indexes"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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11 <filter type="sort_by" column="2" /> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
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12 <validator type="no_options" message="No genomes are available for the selected input dataset" /> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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13 </options> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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14 </param> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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15 </when> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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16 <when value="history"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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17 <param name="fasta" type="data" format="fasta,fasta.gz" |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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18 label="Reference genome fasta file" |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
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19 help="The reference genome is required for long-read optimization." |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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20 /> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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21 </when> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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22 </conditional> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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23 </xml> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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24 |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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25 <xml name="creator"> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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26 <creator> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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27 <organization name="Galaxy Australia" url="https://site.usegalaxy.org.au"/> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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28 </creator> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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29 </xml> |
800f8086da7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 908fb9148a3a116dbf7ccd16e0992e7882e748c2
iuc
parents:
diff
changeset
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30 </macro> |