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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit a0de70c2d45cc307f303c82d30493c7d69e86604"
author galaxy-australia
date Mon, 13 Feb 2023 04:38:21 +0000
parents f78303e25f3e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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1 INFO: /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa local --nthreads 1 --njobs 1 -i input.bam --only-print
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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2 INFO: ipa.py ipa (wrapper) version=1.8.0 ... Checking dependencies ...
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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3 INFO: Dependencies
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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4 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/python3
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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5 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa2-task
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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6 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/falconc
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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7 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/minimap2
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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8 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/nighthawk
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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9 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/pancake
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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10 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/pblayout
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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11 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/racon
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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12 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/samtools
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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13 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa_purge_dups
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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14 /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa_purge_dups_split_fa
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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15 snakemake version=7.21.0
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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16 ipa2-task 1.8.0 (commit 89f9124a7aa07d170db0eb490c12a5aeb36bcf64)
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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17 Machine name: 'Linux'
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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18 Copyright (C) 2004-2021 Pacific Biosciences of California, Inc.
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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19 This program comes with ABSOLUTELY NO WARRANTY; it is intended for
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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20 Research Use Only and not for use in diagnostic procedures.
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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21
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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22 falconc version=1.15.0+git., nim-version=1.2.0
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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23 minimap2 version=2.24-r1122
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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24 Nighthawk 1.0.0 (commit SL-release-10.2.0-11-g332ccaa)
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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25 pancake 1.6.0 (commit SL-release-10.2.0-175-gb750c42)
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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26 pblayout 1.4.0 (commit SL-release-10.2.0-64-gd59326a)
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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27 racon version=1.5.0
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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28 samtools 1.15.1
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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29 Using htslib 1.15.1
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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30 ipa_purge_dups Version: 1.2.5
f78303e25f3e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit 835a903a68cae7f23fd35f3adc4af28b8f508a51"
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