Mercurial > repos > galaxy-australia > ipa_hifi

view test-data/log.txt @ 1:1289beb50ab0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/ipa commit a0de70c2d45cc307f303c82d30493c7d69e86604"
author galaxy-australia
date Mon, 13 Feb 2023 04:38:21 +0000
parents f78303e25f3e
children
line wrap: on
line source

INFO: /home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa local --nthreads 1 --njobs 1 -i input.bam --only-print
INFO: ipa.py ipa (wrapper) version=1.8.0 ... Checking dependencies ...
INFO: Dependencies
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/python3
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa2-task
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/falconc
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/minimap2
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/nighthawk
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/pancake
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/pblayout
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/racon
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/samtools
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa_purge_dups
/home/m.thang/anaconda3/envs/__pbipa@1.8.0/bin/ipa_purge_dups_split_fa
snakemake version=7.21.0
ipa2-task 1.8.0 (commit 89f9124a7aa07d170db0eb490c12a5aeb36bcf64)
 Machine name: 'Linux'
Copyright (C) 2004-2021     Pacific Biosciences of California, Inc.
This program comes with ABSOLUTELY NO WARRANTY; it is intended for
Research Use Only and not for use in diagnostic procedures.

falconc version=1.15.0+git., nim-version=1.2.0
minimap2 version=2.24-r1122
Nighthawk 1.0.0 (commit SL-release-10.2.0-11-g332ccaa)
pancake 1.6.0 (commit SL-release-10.2.0-175-gb750c42)
pblayout 1.4.0 (commit SL-release-10.2.0-64-gd59326a)
racon version=1.5.0
samtools 1.15.1
Using htslib 1.15.1
ipa_purge_dups Version: 1.2.5