Mercurial > repos > galaxyp > asms_tutorial_2016
comparison PeptideShaker_Identifcation_from_mzML.ga @ 1:673718067538 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
| author | galaxyp |
|---|---|
| date | Mon, 16 May 2016 09:16:49 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 0:05ab719b9b93 | 1:673718067538 |
|---|---|
| 1 { | |
| 2 "a_galaxy_workflow": "true", | |
| 3 "annotation": "", | |
| 4 "format-version": "0.1", | |
| 5 "name": "Workflow 1 for ASMS 2016 Workshop", | |
| 6 "steps": { | |
| 7 "0": { | |
| 8 "annotation": "", | |
| 9 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0", | |
| 10 "id": 0, | |
| 11 "input_connections": {}, | |
| 12 "inputs": [], | |
| 13 "label": null, | |
| 14 "name": "Protein Database Downloader", | |
| 15 "outputs": [ | |
| 16 { | |
| 17 "name": "output_database", | |
| 18 "type": "fasta" | |
| 19 } | |
| 20 ], | |
| 21 "position": { | |
| 22 "left": 245.5, | |
| 23 "top": 147 | |
| 24 }, | |
| 25 "post_job_actions": {}, | |
| 26 "tool_errors": null, | |
| 27 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0", | |
| 28 "tool_state": "{\"source\": \"{\\\"set\\\": \\\"+keyword%3a1185\\\", \\\"from\\\": \\\"uniprot\\\", \\\"taxon\\\": \\\"10090\\\", \\\"reviewed\\\": \\\"+\\\", \\\"__current_case__\\\": 0, \\\"include_isoform\\\": \\\"True\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | |
| 29 "tool_version": "0.2.0", | |
| 30 "type": "tool", | |
| 31 "uuid": "0130f0ee-1abf-4157-94b3-62e502b9c061", | |
| 32 "workflow_outputs": [ | |
| 33 { | |
| 34 "label": " Mouse Protein Database", | |
| 35 "output_name": "output_database", | |
| 36 "uuid": "50b914ea-7b4d-4d86-b890-910f9b14f7f6" | |
| 37 } | |
| 38 ] | |
| 39 }, | |
| 40 "1": { | |
| 41 "annotation": "", | |
| 42 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0", | |
| 43 "id": 1, | |
| 44 "input_connections": {}, | |
| 45 "inputs": [], | |
| 46 "label": null, | |
| 47 "name": "Protein Database Downloader", | |
| 48 "outputs": [ | |
| 49 { | |
| 50 "name": "output_database", | |
| 51 "type": "fasta" | |
| 52 } | |
| 53 ], | |
| 54 "position": { | |
| 55 "left": 245.5, | |
| 56 "top": 248 | |
| 57 }, | |
| 58 "post_job_actions": { | |
| 59 "HideDatasetActionoutput_database": { | |
| 60 "action_arguments": {}, | |
| 61 "action_type": "HideDatasetAction", | |
| 62 "output_name": "output_database" | |
| 63 }, | |
| 64 "RenameDatasetActionoutput_database": { | |
| 65 "action_arguments": { | |
| 66 "newname": "Contaminant Protein Database" | |
| 67 }, | |
| 68 "action_type": "RenameDatasetAction", | |
| 69 "output_name": "output_database" | |
| 70 } | |
| 71 }, | |
| 72 "tool_errors": null, | |
| 73 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0", | |
| 74 "tool_state": "{\"source\": \"{\\\"from\\\": \\\"cRAP\\\", \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | |
| 75 "tool_version": "0.2.0", | |
| 76 "type": "tool", | |
| 77 "uuid": "2804e8cd-8bb1-4ffc-9dcc-3ac5e373943a", | |
| 78 "workflow_outputs": [] | |
| 79 }, | |
| 80 "2": { | |
| 81 "annotation": "From proB RNAseq SpliceDB workflow", | |
| 82 "content_id": null, | |
| 83 "id": 2, | |
| 84 "input_connections": {}, | |
| 85 "inputs": [ | |
| 86 { | |
| 87 "description": "From proB RNAseq SpliceDB workflow", | |
| 88 "name": "proB Splice Isoform Database" | |
| 89 } | |
| 90 ], | |
| 91 "label": null, | |
| 92 "name": "Input dataset", | |
| 93 "outputs": [], | |
| 94 "position": { | |
| 95 "left": 177, | |
| 96 "top": 370 | |
| 97 }, | |
| 98 "tool_errors": null, | |
| 99 "tool_id": null, | |
| 100 "tool_state": "{\"name\": \"proB Splice Isoform Database\"}", | |
| 101 "tool_version": null, | |
| 102 "type": "data_input", | |
| 103 "uuid": "afb73119-0730-4926-b571-fc15a9fba9c5", | |
| 104 "workflow_outputs": [] | |
| 105 }, | |
| 106 "3": { | |
| 107 "annotation": "From preB RNAseq SpliceDB workflow", | |
| 108 "content_id": null, | |
| 109 "id": 3, | |
| 110 "input_connections": {}, | |
| 111 "inputs": [ | |
| 112 { | |
| 113 "description": "From preB RNAseq SpliceDB workflow", | |
| 114 "name": "preB Splice Isoform Database" | |
| 115 } | |
| 116 ], | |
| 117 "label": null, | |
| 118 "name": "Input dataset", | |
| 119 "outputs": [], | |
| 120 "position": { | |
| 121 "left": 188, | |
| 122 "top": 495 | |
| 123 }, | |
| 124 "tool_errors": null, | |
| 125 "tool_id": null, | |
| 126 "tool_state": "{\"name\": \"preB Splice Isoform Database\"}", | |
| 127 "tool_version": null, | |
| 128 "type": "data_input", | |
| 129 "uuid": "1c18cd30-ba5a-4c48-9d68-151faf005b59", | |
| 130 "workflow_outputs": [] | |
| 131 }, | |
| 132 "4": { | |
| 133 "annotation": "", | |
| 134 "content_id": null, | |
| 135 "id": 4, | |
| 136 "input_connections": {}, | |
| 137 "inputs": [ | |
| 138 { | |
| 139 "description": "", | |
| 140 "name": "mzML Spectrum files" | |
| 141 } | |
| 142 ], | |
| 143 "label": null, | |
| 144 "name": "Input dataset collection", | |
| 145 "outputs": [], | |
| 146 "position": { | |
| 147 "left": 256.5, | |
| 148 "top": 642 | |
| 149 }, | |
| 150 "tool_errors": null, | |
| 151 "tool_id": null, | |
| 152 "tool_state": "{\"collection_type\": \"list\", \"name\": \"mzML Spectrum files\"}", | |
| 153 "tool_version": null, | |
| 154 "type": "data_collection_input", | |
| 155 "uuid": "7e4ce412-2dc8-4905-959b-b765c6fe3726", | |
| 156 "workflow_outputs": [] | |
| 157 }, | |
| 158 "5": { | |
| 159 "annotation": "", | |
| 160 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", | |
| 161 "id": 5, | |
| 162 "input_connections": { | |
| 163 "inputs_0|input": { | |
| 164 "id": 2, | |
| 165 "output_name": "output" | |
| 166 }, | |
| 167 "inputs_1|input": { | |
| 168 "id": 3, | |
| 169 "output_name": "output" | |
| 170 } | |
| 171 }, | |
| 172 "inputs": [], | |
| 173 "label": null, | |
| 174 "name": "FASTA Merge Files and Filter Unique Sequences", | |
| 175 "outputs": [ | |
| 176 { | |
| 177 "name": "output", | |
| 178 "type": "fasta" | |
| 179 } | |
| 180 ], | |
| 181 "position": { | |
| 182 "left": 399.5, | |
| 183 "top": 397 | |
| 184 }, | |
| 185 "post_job_actions": { | |
| 186 "HideDatasetActionoutput": { | |
| 187 "action_arguments": {}, | |
| 188 "action_type": "HideDatasetAction", | |
| 189 "output_name": "output" | |
| 190 }, | |
| 191 "RenameDatasetActionoutput": { | |
| 192 "action_arguments": { | |
| 193 "newname": "Merged Sample Splice Isoform Databases: proB + preB" | |
| 194 }, | |
| 195 "action_type": "RenameDatasetAction", | |
| 196 "output_name": "output" | |
| 197 } | |
| 198 }, | |
| 199 "tool_errors": null, | |
| 200 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", | |
| 201 "tool_state": "{\"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}, {\\\"__index__\\\": 1, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | |
| 202 "tool_version": "1.0", | |
| 203 "type": "tool", | |
| 204 "uuid": "dcdf18e5-3d06-4a10-a717-ef0c976345e6", | |
| 205 "workflow_outputs": [] | |
| 206 }, | |
| 207 "6": { | |
| 208 "annotation": "", | |
| 209 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/mgf_formatter/mgf_formatter/0.1.0", | |
| 210 "id": 6, | |
| 211 "input_connections": { | |
| 212 "type|inputs": { | |
| 213 "id": 4, | |
| 214 "output_name": "output" | |
| 215 } | |
| 216 }, | |
| 217 "inputs": [], | |
| 218 "label": null, | |
| 219 "name": "MGF Formatter", | |
| 220 "outputs": [ | |
| 221 { | |
| 222 "name": "output", | |
| 223 "type": "mgf" | |
| 224 } | |
| 225 ], | |
| 226 "position": { | |
| 227 "left": 612.5, | |
| 228 "top": 609 | |
| 229 }, | |
| 230 "post_job_actions": { | |
| 231 "HideDatasetActionoutput": { | |
| 232 "action_arguments": {}, | |
| 233 "action_type": "HideDatasetAction", | |
| 234 "output_name": "output" | |
| 235 } | |
| 236 }, | |
| 237 "tool_errors": null, | |
| 238 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/mgf_formatter/mgf_formatter/0.1.0", | |
| 239 "tool_state": "{\"__page__\": 0, \"itraq_filter\": \"\\\"True\\\"\", \"__rerun_remap_job_id__\": null, \"type\": \"{\\\"input_type\\\": \\\"mzml\\\", \\\"__current_case__\\\": 0, \\\"inputs\\\": null}\", \"mgf_format\": \"\\\"DEFAULT\\\"\"}", | |
| 240 "tool_version": "0.1.0", | |
| 241 "type": "tool", | |
| 242 "uuid": "52cd6753-b0e6-4631-a98f-b7962b6ddc9b", | |
| 243 "workflow_outputs": [] | |
| 244 }, | |
| 245 "7": { | |
| 246 "annotation": "", | |
| 247 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", | |
| 248 "id": 7, | |
| 249 "input_connections": { | |
| 250 "inputs_0|input": { | |
| 251 "id": 0, | |
| 252 "output_name": "output_database" | |
| 253 }, | |
| 254 "inputs_1|input": { | |
| 255 "id": 1, | |
| 256 "output_name": "output_database" | |
| 257 }, | |
| 258 "inputs_2|input": { | |
| 259 "id": 5, | |
| 260 "output_name": "output" | |
| 261 } | |
| 262 }, | |
| 263 "inputs": [], | |
| 264 "label": null, | |
| 265 "name": "FASTA Merge Files and Filter Unique Sequences", | |
| 266 "outputs": [ | |
| 267 { | |
| 268 "name": "output", | |
| 269 "type": "fasta" | |
| 270 } | |
| 271 ], | |
| 272 "position": { | |
| 273 "left": 711.5, | |
| 274 "top": 209 | |
| 275 }, | |
| 276 "post_job_actions": { | |
| 277 "HideDatasetActionoutput": { | |
| 278 "action_arguments": {}, | |
| 279 "action_type": "HideDatasetAction", | |
| 280 "output_name": "output" | |
| 281 } | |
| 282 }, | |
| 283 "tool_errors": null, | |
| 284 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", | |
| 285 "tool_state": "{\"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}, {\\\"__index__\\\": 1, \\\"input\\\": null}, {\\\"__index__\\\": 2, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/website/galaxyp2014.msi.umn.edu/galaxy-central/tool-data/shared/ucsc/chrom/GRCm38_canon.len\\\"\", \"__page__\": 0}", | |
| 286 "tool_version": "1.0", | |
| 287 "type": "tool", | |
| 288 "uuid": "c138e24b-4cb8-4e40-b277-aff37cbf6ba2", | |
| 289 "workflow_outputs": [] | |
| 290 }, | |
| 291 "8": { | |
| 292 "annotation": "", | |
| 293 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.8.0", | |
| 294 "id": 8, | |
| 295 "input_connections": { | |
| 296 "input_database": { | |
| 297 "id": 7, | |
| 298 "output_name": "output" | |
| 299 }, | |
| 300 "peak_lists": { | |
| 301 "id": 6, | |
| 302 "output_name": "output" | |
| 303 } | |
| 304 }, | |
| 305 "inputs": [], | |
| 306 "label": null, | |
| 307 "name": "Search GUI", | |
| 308 "outputs": [ | |
| 309 { | |
| 310 "name": "searchgui_results", | |
| 311 "type": "searchgui_archive" | |
| 312 } | |
| 313 ], | |
| 314 "position": { | |
| 315 "left": 992.5, | |
| 316 "top": 412 | |
| 317 }, | |
| 318 "post_job_actions": { | |
| 319 "HideDatasetActionsearchgui_results": { | |
| 320 "action_arguments": {}, | |
| 321 "action_type": "HideDatasetAction", | |
| 322 "output_name": "searchgui_results" | |
| 323 } | |
| 324 }, | |
| 325 "tool_errors": null, | |
| 326 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.8.0", | |
| 327 "tool_state": "{\"msgf\": \"{\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"use_gene_mapping\": \"\\\"False\\\"\", \"min_charge\": \"\\\"2\\\"\", \"__page__\": 0, \"peak_lists\": \"null\", \"engines\": \"[\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\", \\\"Comet\\\"]\", \"__rerun_remap_job_id__\": null, \"create_decoy\": \"\\\"True\\\"\", \"enzyme\": \"\\\"Trypsin\\\"\", \"precursor_ion_tol_units\": \"\\\"1\\\"\", \"omssa\": \"{\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"precursor_ion_tol\": \"\\\"10.0\\\"\", \"variable_modifications\": \"[\\\"Oxidation of M\\\", \\\"iTRAQ 4-plex of Y\\\"]\", \"input_database\": \"null\", \"fragment_tol\": \"\\\"0.1\\\"\", \"reverse_ion\": \"\\\"y\\\"\", \"forward_ion\": \"\\\"b\\\"\", \"searchgui_advanced\": \"{\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"xtandem\": \"{\\\"xtandem_quick_acetyl\\\": \\\"False\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"False\\\", \\\"xtandem_stp_bias\\\": \\\"False\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"False\\\", \\\"xtandem_output_spectra\\\": \\\"True\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"True\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"max_charge\": \"\\\"6\\\"\", \"fixed_modifications\": \"[\\\"Carbamidomethylation of C\\\", \\\"iTRAQ 4-plex of K\\\", \\\"iTRAQ 4-plex of peptide N-term\\\"]\", \"comet\": \"{\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"missed_cleavages\": \"\\\"2\\\"\"}", | |
| 328 "tool_version": "2.8.0", | |
| 329 "type": "tool", | |
| 330 "uuid": "aaa7fa44-ab4f-4f0c-8497-235885e4e8cb", | |
| 331 "workflow_outputs": [] | |
| 332 }, | |
| 333 "9": { | |
| 334 "annotation": "", | |
| 335 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.10.0", | |
| 336 "id": 9, | |
| 337 "input_connections": { | |
| 338 "searchgui_input": { | |
| 339 "id": 8, | |
| 340 "output_name": "searchgui_results" | |
| 341 } | |
| 342 }, | |
| 343 "inputs": [], | |
| 344 "label": null, | |
| 345 "name": "Peptide Shaker", | |
| 346 "outputs": [ | |
| 347 { | |
| 348 "name": "mzidentML", | |
| 349 "type": "mzid" | |
| 350 }, | |
| 351 { | |
| 352 "name": "output_cps", | |
| 353 "type": "peptideshaker_archive" | |
| 354 }, | |
| 355 { | |
| 356 "name": "output_zip", | |
| 357 "type": "zip" | |
| 358 }, | |
| 359 { | |
| 360 "name": "output_certificate", | |
| 361 "type": "txt" | |
| 362 }, | |
| 363 { | |
| 364 "name": "output_hierarchical", | |
| 365 "type": "tabular" | |
| 366 }, | |
| 367 { | |
| 368 "name": "output_psm_phosphorylation", | |
| 369 "type": "tabular" | |
| 370 }, | |
| 371 { | |
| 372 "name": "output_psm", | |
| 373 "type": "tabular" | |
| 374 }, | |
| 375 { | |
| 376 "name": "output_peptides_phosphorylation", | |
| 377 "type": "tabular" | |
| 378 }, | |
| 379 { | |
| 380 "name": "output_peptides", | |
| 381 "type": "tabular" | |
| 382 }, | |
| 383 { | |
| 384 "name": "output_proteins_phosphorylation", | |
| 385 "type": "tabular" | |
| 386 }, | |
| 387 { | |
| 388 "name": "output_proteins", | |
| 389 "type": "tabular" | |
| 390 } | |
| 391 ], | |
| 392 "position": { | |
| 393 "left": 1343.5, | |
| 394 "top": 285 | |
| 395 }, | |
| 396 "post_job_actions": { | |
| 397 "HideDatasetActionmzidentML": { | |
| 398 "action_arguments": {}, | |
| 399 "action_type": "HideDatasetAction", | |
| 400 "output_name": "mzidentML" | |
| 401 }, | |
| 402 "HideDatasetActionoutput_certificate": { | |
| 403 "action_arguments": {}, | |
| 404 "action_type": "HideDatasetAction", | |
| 405 "output_name": "output_certificate" | |
| 406 }, | |
| 407 "HideDatasetActionoutput_cps": { | |
| 408 "action_arguments": {}, | |
| 409 "action_type": "HideDatasetAction", | |
| 410 "output_name": "output_cps" | |
| 411 }, | |
| 412 "HideDatasetActionoutput_hierarchical": { | |
| 413 "action_arguments": {}, | |
| 414 "action_type": "HideDatasetAction", | |
| 415 "output_name": "output_hierarchical" | |
| 416 }, | |
| 417 "HideDatasetActionoutput_peptides": { | |
| 418 "action_arguments": {}, | |
| 419 "action_type": "HideDatasetAction", | |
| 420 "output_name": "output_peptides" | |
| 421 }, | |
| 422 "HideDatasetActionoutput_peptides_phosphorylation": { | |
| 423 "action_arguments": {}, | |
| 424 "action_type": "HideDatasetAction", | |
| 425 "output_name": "output_peptides_phosphorylation" | |
| 426 }, | |
| 427 "HideDatasetActionoutput_proteins": { | |
| 428 "action_arguments": {}, | |
| 429 "action_type": "HideDatasetAction", | |
| 430 "output_name": "output_proteins" | |
| 431 }, | |
| 432 "HideDatasetActionoutput_proteins_phosphorylation": { | |
| 433 "action_arguments": {}, | |
| 434 "action_type": "HideDatasetAction", | |
| 435 "output_name": "output_proteins_phosphorylation" | |
| 436 }, | |
| 437 "HideDatasetActionoutput_psm": { | |
| 438 "action_arguments": {}, | |
| 439 "action_type": "HideDatasetAction", | |
| 440 "output_name": "output_psm" | |
| 441 }, | |
| 442 "HideDatasetActionoutput_psm_phosphorylation": { | |
| 443 "action_arguments": {}, | |
| 444 "action_type": "HideDatasetAction", | |
| 445 "output_name": "output_psm_phosphorylation" | |
| 446 }, | |
| 447 "HideDatasetActionoutput_zip": { | |
| 448 "action_arguments": {}, | |
| 449 "action_type": "HideDatasetAction", | |
| 450 "output_name": "output_zip" | |
| 451 } | |
| 452 }, | |
| 453 "tool_errors": null, | |
| 454 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.10.0", | |
| 455 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"processing_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"True\\\", \\\"max_peptide_length\\\": \\\"50\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"null\", \"species_type\": \"{\\\"species_type_selector\\\": \\\"no_species_type\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"mzidentML\\\", \\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"chromInfo\": \"\\\"/website/galaxyp2014.msi.umn.edu/galaxy-central/tool-data/shared/ucsc/chrom/GRCm38_canon.len\\\"\"}", | |
| 456 "tool_version": "1.10.0", | |
| 457 "type": "tool", | |
| 458 "uuid": "4ed37c6f-a6a2-4e8b-ba45-620e8b66445b", | |
| 459 "workflow_outputs": [] | |
| 460 } | |
| 461 }, | |
| 462 "uuid": "a3d518ca-b4fd-48ca-884e-45ca7dd027dc" | |
| 463 } |
