Mercurial > repos > galaxyp > blast_plus_remote_blastp
changeset 4:a51980bc0ffe
Add the -show_gis option (NCBI-gis on the NCBI Blast website)
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 04 May 2015 09:58:57 -0500 |
| parents | 9f369b905447 |
| children | 22a767177ac9 |
| files | tools/blast_plus_remote_blastp.xml |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/tools/blast_plus_remote_blastp.xml Wed Oct 01 21:08:57 2014 -0400 +++ b/tools/blast_plus_remote_blastp.xml Mon May 04 09:58:57 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="blast_plus_remote_blastp" name="NCBI BLAST+ remote blastp" version="1.0"> +<tool id="blast_plus_remote_blastp" name="NCBI BLAST+ remote blastp" version="1.0.1"> <description>Search protein database with protein query sequence(s)</description> <parallelism method="multi" split_inputs="query" split_mode="number_of_parts" split_size="4" shared_inputs="subject" merge_outputs="output1"></parallelism> <version_command>blastp -version</version_command> @@ -43,7 +43,7 @@ -out blast_output ##Set the extended list here so if/when we add things, saved workflows are not affected #if str($fmt_opt.out_format)=="text": - -outfmt "$fmt_opt.outfmt" $fmt_opt.html + -outfmt "$fmt_opt.outfmt" $fmt_opt.html $fmt_opt.show_gis #if $fmt_opt.num_descriptions.__str__.strip() != '': -num_descriptions $fmt_opt.num_descriptions #end if @@ -162,6 +162,8 @@ <option value="4">Flat query-anchored text</option> </param> <param name="html" type="boolean" label="Html" truevalue="-html" falsevalue="" checked="true" /> + <param name="show_gis" type="boolean" label="NCBI-gis" truevalue="-show_gis" falsevalue="" checked="false" + help="Show the NCBI gis in the Subject def lines"/> <param name="num_descriptions" type="integer" value="500" optional="true" label="Maximum Decriptions to show" help="Show one-line descriptions for this number of database sequences."> <validator type="in_range" min="0" /> </param>