Mercurial > repos > galaxyp > cardinal_combine
changeset 14:5f066029763e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7-dirty"
| author | galaxyp |
|---|---|
| date | Fri, 19 Feb 2021 18:54:56 +0000 |
| parents | e215f71d7983 |
| children | a8ecb52264c4 |
| files | combine.xml |
| diffstat | 1 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/combine.xml Wed Dec 23 22:15:48 2020 +0000 +++ b/combine.xml Fri Feb 19 18:54:56 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.0"> +<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.1"> <description> combine several mass spectrometry imaging datasets into one </description> @@ -120,6 +120,11 @@ ## same name for MSI data files necessary to combine data into one single coordinate system run(msidata_$i) = "msidata" + ## remove z dimension and 3D information in pixelData to allow combining datasets with and without z dimension + coord(msidata_${i})\$z <- NULL + pData(msidata_${i})\$'3DPositionX' <- NULL + pData(msidata_${i})\$'3DPositionY' <- NULL + ############ 3) Read and process annotation tabular files ###################### #if str($annotation_cond.annotation_tabular) == 'annotation'