Mercurial > repos > galaxyp > data_manager_eggnog_mapper
comparison data_manager/data_manager_eggnog.xml @ 2:3d82020b1e3b draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author | galaxyp |
---|---|
date | Fri, 19 Feb 2021 18:53:40 +0000 |
parents | 077cf0a99144 |
children | 5a2ffc486246 |
comparison
equal
deleted
inserted
replaced
1:077cf0a99144 | 2:3d82020b1e3b |
---|---|
1 <tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@" tool_type="manage_data"> | 1 <tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09"> |
2 <description>eggnog data</description> | 2 <description>eggnog data</description> |
3 <macros> | 3 <macros> |
4 <import>eggnog_macros.xml</import> | 4 <import>eggnog_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
7 <expand macro="version_command"/> | 7 <expand macro="version_command"/> |
8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
9 #import json, os | 9 #import json, os |
10 #set params = json.loads(open(str($out_file)).read()) | 10 #set params = json.loads(open(str($out_file)).read()) |
11 #set install_path = $params['output_data'][0]['extra_files_path'].encode('ascii', 'replace') | 11 #set install_path = $params['output_data'][0]['extra_files_path'] |
12 @DOWNLOAD_CMD@ | 12 @DOWNLOAD_CMD@ |
13 ]]></command> | 13 ]]></command> |
14 <inputs> | 14 <inputs> |
15 <expand macro="data_manager_params"/> | 15 <expand macro="data_manager_params"/> |
16 </inputs> | 16 </inputs> |
18 <tests> | 18 <tests> |
19 <expand macro="data_manager_test"/> | 19 <expand macro="data_manager_test"/> |
20 </tests> | 20 </tests> |
21 <help><![CDATA[ | 21 <help><![CDATA[ |
22 This tool downloads eggnog data using download_eggnog_data.py | 22 This tool downloads eggnog data using download_eggnog_data.py |
23 and populates the data tables: eggnog_mapper_db. | 23 and populates the data tables: eggnog_mapper_db_versioned. |
24 The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/ | 24 The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/ |
25 can vary from 1G to 80G in size. | 25 can vary from 1G to 80G in size. |
26 | 26 |
27 This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml | 27 This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml |
28 in directory eggnog_data/<eggnog data version>/. | 28 in directory eggnog_data/<eggnog data version>/. |