Mercurial > repos > galaxyp > decoyfasta
changeset 4:777264a5d0ed draft
Uploaded
| author | galaxyp |
|---|---|
| date | Fri, 12 Jul 2013 12:50:53 -0400 |
| parents | 7401093cca6c |
| children | ed5b032876b9 |
| files | decoy_fasta.xml |
| diffstat | 1 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/decoy_fasta.xml Thu Jun 20 16:32:33 2013 -0400 +++ b/decoy_fasta.xml Fri Jul 12 12:50:53 2013 -0400 @@ -19,10 +19,10 @@ </command> <inputs> - <param format="fasta" name="input" type="data" label="FASTA Input" /> - <param name="include_original" type="boolean" truevalue="" falsevalue="-no_orig" label="Include original entries in output database" checked="True" /> + <param format="fasta" name="input" type="data" label="FASTA Input" help="select input file from history in FASTA format" /> + <param name="include_original" type="boolean" truevalue="" falsevalue="-no_orig" label="Include original entries in output database" checked="True" help="(default) keep checked in all standard searches" /> <conditional name="freq_type"> - <param name="advanced" type="select" label="Specify advanced decoy frequency options?"> + <param name="advanced" type="select" label="Specify advanced decoy frequency options?" help=""Decoy Prefix" will name the prefix of each decoy sequence, "Frequency" will specify how many decoy sequences are created"> <option value="no">No, just create database with one reversed sequence for every input sequence</option> <option value="yes">Yes, I want to specify multiple prefixes and specific frequencies</option> </param> @@ -48,8 +48,7 @@ **What it does** Given an input database, this tool will produce another database with -reversed sequences to use as decoys for FDR estimation in protein -search identification. This tool employs the decoyFASTA program from +reversed sequences to use as decoys for False Discovery Rate (FDR) estimation in protein search identification. This tool employs the decoyFASTA program from the Transproteomic Pipeline. ------