Mercurial > repos > galaxyp > feature_alignment

diff macros.xml @ 0:7ac5166f8bbc draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/msproteomicstools/msproteomicstools/blob/master/TRIC-README.md commit 75f5dee4cc5cb3dbfac3d1d32d8bceb2a22634d7"
author galaxyp
date Fri, 10 Dec 2021 00:30:05 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Dec 10 00:30:05 2021 +0000
@@ -0,0 +1,10 @@
+<?xml version="1.0" ?>
+<macros>
+     <xml name="mst_params">
+         <param name="mst_useRTCorrection" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Use aligned peakgroup RT to continue threading" help="Use aligned peakgroup RT to continue threading in MST algorithm. It is highly recommend to set this to 'True'"/>
+         <param name="mst_Stdev_multiplier" type="float" value="-1.0" label="Standard deviation multiplier"
+                help="Turn on adaptive RT tolerances: How many standard deviations the peakgroup can deviate in RT during the alignment (if less than max_rt_diff, then max_rt_diff is used). It is recommended to set this to a value between 2.0 and 4.0."/>
+         <param name="mst_useLocalStdev" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use local standard deviation" help="Use standard deviation of local region of the chromatogram. This is experimental and may not work."/>
+         <param name="mst_useReference" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use a reference-based tree for alignment" help=""/>
+    </xml>
+</macros>
\ No newline at end of file