view macros.xml @ 0:7ac5166f8bbc draft default tip

"planemo upload for repository https://github.com/msproteomicstools/msproteomicstools/blob/master/TRIC-README.md commit 75f5dee4cc5cb3dbfac3d1d32d8bceb2a22634d7"

<?xml version="1.0" ?>
<macros>
     <xml name="mst_params">
         <param name="mst_useRTCorrection" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Use aligned peakgroup RT to continue threading" help="Use aligned peakgroup RT to continue threading in MST algorithm. It is highly recommend to set this to 'True'"/>
         <param name="mst_Stdev_multiplier" type="float" value="-1.0" label="Standard deviation multiplier"
                help="Turn on adaptive RT tolerances: How many standard deviations the peakgroup can deviate in RT during the alignment (if less than max_rt_diff, then max_rt_diff is used). It is recommended to set this to a value between 2.0 and 4.0."/>
         <param name="mst_useLocalStdev" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use local standard deviation" help="Use standard deviation of local region of the chromatogram. This is experimental and may not work."/>
         <param name="mst_useReference" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use a reference-based tree for alignment" help=""/>
    </xml>
</macros>