annotate test-data/08/combined/txt/proteinGroups.txt @ 12:0839f84def5e draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"

Protein IDs	Majority protein IDs	Peptide counts (all)	Peptide counts (razor+unique)	Peptide counts (unique)	Fasta headers	Number of proteins	Peptides	Razor + unique peptides	Unique peptides	Peptides tmt_data.mzXML	Razor + unique peptides tmt_data.mzXML	Unique peptides tmt_data.mzXML	Sequence coverage [%]	Unique + razor sequence coverage [%]	Unique sequence coverage [%]	Mol. weight [kDa]	Sequence length	Sequence lengths	Q-value	Score	Reporter intensity corrected 1 tmt_data.mzXML	Reporter intensity corrected 2 tmt_data.mzXML	Reporter intensity corrected 3 tmt_data.mzXML	Reporter intensity corrected 4 tmt_data.mzXML	Reporter intensity corrected 5 tmt_data.mzXML	Reporter intensity corrected 6 tmt_data.mzXML	Reporter intensity corrected 7 tmt_data.mzXML	Reporter intensity corrected 8 tmt_data.mzXML	Reporter intensity corrected 9 tmt_data.mzXML	Reporter intensity corrected 10 tmt_data.mzXML	Reporter intensity corrected 11 tmt_data.mzXML	Reporter intensity corrected 12 tmt_data.mzXML	Reporter intensity corrected 13 tmt_data.mzXML	Reporter intensity corrected 14 tmt_data.mzXML	Reporter intensity corrected 15 tmt_data.mzXML	Reporter intensity corrected 16 tmt_data.mzXML	Reporter intensity 1 tmt_data.mzXML	Reporter intensity 2 tmt_data.mzXML	Reporter intensity 3 tmt_data.mzXML	Reporter intensity 4 tmt_data.mzXML	Reporter intensity 5 tmt_data.mzXML	Reporter intensity 6 tmt_data.mzXML	Reporter intensity 7 tmt_data.mzXML	Reporter intensity 8 tmt_data.mzXML	Reporter intensity 9 tmt_data.mzXML	Reporter intensity 10 tmt_data.mzXML	Reporter intensity 11 tmt_data.mzXML	Reporter intensity 12 tmt_data.mzXML	Reporter intensity 13 tmt_data.mzXML	Reporter intensity 14 tmt_data.mzXML	Reporter intensity 15 tmt_data.mzXML	Reporter intensity 16 tmt_data.mzXML	Reporter intensity count 1 tmt_data.mzXML	Reporter intensity count 2 tmt_data.mzXML	Reporter intensity count 3 tmt_data.mzXML	Reporter intensity count 4 tmt_data.mzXML	Reporter intensity count 5 tmt_data.mzXML	Reporter intensity count 6 tmt_data.mzXML	Reporter intensity count 7 tmt_data.mzXML	Reporter intensity count 8 tmt_data.mzXML	Reporter intensity count 9 tmt_data.mzXML	Reporter intensity count 10 tmt_data.mzXML	Reporter intensity count 11 tmt_data.mzXML	Reporter intensity count 12 tmt_data.mzXML	Reporter intensity count 13 tmt_data.mzXML	Reporter intensity count 14 tmt_data.mzXML	Reporter intensity count 15 tmt_data.mzXML	Reporter intensity count 16 tmt_data.mzXML	Sequence coverage tmt_data.mzXML [%]	Intensity	Intensity tmt_data.mzXML	MS/MS count	Only identified by site	Reverse	Potential contaminant	id	Peptide IDs	Peptide is razor	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Oxidation (M) site positions	Taxonomy IDs
CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	1	1	1		1	1	1	1	1	1	1	0.8	0.8	0.8	137.98	1222	1222	0	6	0	0	5121.2	220760	202180	225830	200210	259320	246570	233570	148280	4478.8	0	0	0	0	0	0	5121.2	220760	202180	225830	200210	259320	246570	233570	148280	4478.8	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0.8	99228000	99228000	1			+	0	2	True	2	2	2	2			-1
sp|A6NKP2|D42E2_HUMAN	sp|A6NKP2|D42E2_HUMAN	1	1	1	sp|A6NKP2|D42E2_HUMAN Putative short-chain dehydrogenase/reductase family 42E member 2 OS=Homo sapiens OX=9606 GN=SDR42E2 PE=3 SV=3	1	1	1	1	1	1	1	2.6	2.6	2.6	46.869	422	422	0	6	0	3941.4	4062.3	178440	117220	94899	131440	159880	91982	74974	76646	3167.4	940.58	0	0	0	0	3941.4	4062.3	178440	117220	94899	131440	159880	91982	74974	76646	3167.4	940.58	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	2.6	43797000	43797000	1				1	5	True	5	5	5	5			-1
sp|Q32M88|PGGHG_HUMAN	sp|Q32M88|PGGHG_HUMAN	1	1	1	sp|Q32M88|PGGHG_HUMAN Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens OX=9606 GN=PGGHG PE=1 SV=2	1	1	1	1	1	1	1	0.9	0.9	0.9	80.654	737	737	0	6	0	0	4057.5	92629	91851	99927	106520	117440	118770	118100	124330	3555.6	2741.6	0	0	0	0	0	4057.5	92629	91851	99927	106520	117440	118770	118100	124330	3555.6	2741.6	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0.9	11999000	11999000	1				2	1	True	1	1	1	1			-1
sp|Q8IXT5|RB12B_HUMAN	sp|Q8IXT5|RB12B_HUMAN	1	1	1	sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens OX=9606 GN=RBM12B PE=1 SV=2	1	1	1	1	1	1	1	0.7	0.7	0.7	118.1	1001	1001	0	6	0	0	2539.1	96839	103090	105560	92520	63071	68162	70636	42876	0	0	0	0	0	0	0	2539.1	96839	103090	105560	92520	63071	68162	70636	42876	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0.7	53433000	53433000	1				3	0	True	0	0	0	0			-1
sp|Q8N782|ZN525_HUMAN	sp|Q8N782|ZN525_HUMAN	1	1	1	sp|Q8N782|ZN525_HUMAN Zinc finger protein 525 OS=Homo sapiens OX=9606 GN=ZNF525 PE=2 SV=2	1	1	1	1	1	1	1	4.6	4.6	4.6	23.07	197	197	0	6	0	1694.6	6271.6	277230	244210	164300	288610	344230	225420	253930	201720	11497	6283.4	0	0	0	0	1694.6	6271.6	277230	244210	164300	288610	344230	225420	253930	201720	11497	6283.4	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	4.6	365510000	365510000	1				4	4	True	4	4	4	4			-1
sp|Q9UBQ7|GRHPR_HUMAN	sp|Q9UBQ7|GRHPR_HUMAN	1	1	1	sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens OX=9606 GN=GRHPR PE=1 SV=1	1	1	1	1	1	1	1	2.4	2.4	2.4	35.668	328	328	0	6	0	0	4516.6	233890	211220	199740	210150	244750	222310	227650	177190	5951.5	4942.8	0	0	0	0	0	4516.6	233890	211220	199740	210150	244750	222310	227650	177190	5951.5	4942.8	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	0	0	0	2.4	30472000	30472000	1				5	3	True	3	3	3	3			-1