annotate test-data/mqpar/txt/proteinGroups.txt @ 15:97a7f34fcb6a draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"

Protein IDs	Majority protein IDs	Peptide counts (all)	Peptide counts (razor+unique)	Peptide counts (unique)	Fasta headers	Number of proteins	Peptides	Razor + unique peptides	Unique peptides	Sequence coverage [%]	Unique + razor sequence coverage [%]	Unique sequence coverage [%]	Mol. weight [kDa]	Sequence length	Sequence lengths	Q-value	Score	Intensity	MS/MS count	Only identified by site	Reverse	Potential contaminant	id	Peptide IDs	Peptide is razor	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Oxidation (M) site positions	Taxonomy IDs
CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	1;1	1;1	1;1	;	2	1	1	1	0.6	0.6	0.6	192.79	1741	1741;1742	0	6.0615	0	1			+	0	6	True	6	7	8	8			-1;-1
CON__P02676	CON__P02676	1	1	1		1	1	1	1	2.8	2.8	2.8	56.44	495	495	0	5.9349	114430	2			+	1	9	True	9	11;12	13;14	13			-1
bsa;CON__P02769	bsa;CON__P02769	4;4	4;4	4;4	bsa sp|P02769|ALBU_BOVIN Serum albumin OS=Bos taurus OX=9913 GN=ALB PE=1 SV=4;	2	4	4	4	7.7	7.7	7.7	69.293	607	607;607	0	30.634	563190	5			+	2	0;1;2;10	True;True;True;True	0;1;2;10	0;1;2;3;13	0;1;2;3;4;15	0;1;2;15			-1;-1
CON__P04258	CON__P04258	1	1	1		1	1	1	1	1.2	1.2	1.2	138.44	1466	1466	0	5.8294	0	1			+	3	5	True	5	6	7	7			-1
CON__P35908v2;CON__P35908	CON__P35908v2;CON__P35908	1;1	1;1	1;1	;	2	1	1	1	4.2	4.2	4.2	65.432	639	639;645	0	7.1773	27010	0			+	4	8	True	8	10	12	12			-1;-1
CON__Q29443;CON__Q0IIK2	CON__Q29443;CON__Q0IIK2	1;1	1;1	1;1	;	2	1	1	1	1.8	1.8	1.8	75.829	685	685;704	0	6.2783	137950	3			+	5	7	True	7	8;9	9;10;11	9			-1;-1