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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc
author galaxyp
date Mon, 18 Mar 2024 13:07:04 +0000
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2 GalaxyP - MaxQuant
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3 ==================
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6 * Home: https://github.com/galaxyproteomics/tools-galaxyp/
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7 * Tool ID: ``maxquant``
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8 * Tool Type: ``default``
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10 Description
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11 -----------
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13 Wrapper for the MaxQuant version available in conda.
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15 Updating
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16 --------
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18 MaxQuant often changes the layout of its parameters file.
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19 So changes to the code are likely to be necessary when
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20 updating to a new version of MaxQuant. The init.py script
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21 can be used to initialize the tool with a new list of
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22 modifications or enzymes. From the tool dir run:
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24 ./init.py -m MODIFICATIONS.XML -e ENZYMES.XML
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26 The location of these xml files usually is:
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27 ANACONDA_DIR/bin/conf/