annotate test-data/01/combined/txt/modificationSpecificPeptides.txt @ 4:dcd39bcc7481 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"

Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Unique (Groups)	Unique (Proteins)	Oxidation (M)	Missed cleavages	Experiment BSA_min_23.mzXML	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	Intensity BSA_min_23.mzXML	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count
DSFDIIK	Unmodified	836.42798	0.42798405	2	CON__ENSEMBL:ENSBTAP00000016046	yes	yes	0	0	1	0.58669	0.58669	2	8.9583E-05	96	BSA_min_23	0	0		+	768320	768320	0	2	0	0	0	0		1
LLESEECR	Unmodified	1034.4703	0.47025958	6	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	yes	no	0	0	1	0.50957	0.50957	2	0.010121	86	BSA_min_23	1.6313	1.6313		+	0	0	1	6	1	1	1	1		1
LVTDLTK	Unmodified	788.46437	0.46436956	0	CON__P02769;bsa;CON__P02768-1	yes	no	0	0	1	0.010013	0.010013	2	0.005963	2	BSA_min_23	0	0		+	0	0	2	0	2	2	2	2		1
QLELEKQLEK	Unmodified	1256.6976	0.69761697	1	CON__ENSEMBL:ENSBTAP00000001528	yes	yes	0	1	2	0.34029	0.34029	2;3	0.0003393	52	BSA_min_23	0	0		+	142430	142430	3	1	3	3;4	3;4;5	3		2
SLSAIRER	Unmodified	930.52468	0.52467841	5	CON__Q03247	yes	yes	0	1	1	0.10674	0.10674	2	0.015457	17	BSA_min_23	0	0		+	33499	33499	4	5	4	5	6	6		0
SQTSHRGYSASSAR	Unmodified	1493.6971	0.69711648	4	CON__P50446	yes	yes	0	1	1	0.29902	0.29902	2	0.0091697	53	BSA_min_23	0	0		+	59701	59701	5	4	5	6	7	7		1
TLGPWGQR	Unmodified	913.477	0.47699993	3	CON__ENSEMBL:ENSBTAP00000018574	yes	yes	0	0	1	0.4547	0.4547	2	0.00018307	72	BSA_min_23	0	0		+	61894	61894	6	3	6	7	8	8		1