comparison maxquant_mqpar.xml @ 22:9c52362ae7bb draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc

21:8934bc76bb52

<tool id="maxquant_mqpar" name="MaxQuant (using mqpar.xml)" version="@VERSION@+galaxy@VERSION_SUFFIX_MQPAR@" profile="@PROFILE@">
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="required_files"/>
    <command detect_errors="exit_code"><![CDATA[
    export COMPlus_EnableDiagnostics=0 &&
    ## link galaxy datasets to filenames accepted by maxquant

    </inputs>

    <expand macro="outputs"/>

    <tests>
        <test>
            <param name="ftype" value=".mzxml" />
            <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" />
            <param name="fasta_files" value="bsa.fasta" />
            <param name="identifier_parse_rule" value="&gt;([^\s]*)" />
            <param name="description_parse_rule" value="&gt;(.*)" />

22:9c52362ae7bb

<tool id="maxquant_mqpar" name="MaxQuant (using mqpar.xml)" version="@VERSION@+galaxy@VERSION_SUFFIX_MQPAR@" profile="@PROFILE@">
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="xrefs"/>
    <expand macro="requirements"/>
    <expand macro="required_files"/>
    <command detect_errors="exit_code"><![CDATA[
    export COMPlus_EnableDiagnostics=0 &&
    ## link galaxy datasets to filenames accepted by maxquant

    </inputs>

    <expand macro="outputs"/>

    <tests>
        <test expect_num_outputs="19">
            <param name="ftype" value=".mzxml" />
            <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" />
            <param name="fasta_files" value="bsa.fasta" />
            <param name="identifier_parse_rule" value="&gt;([^\s]*)" />
            <param name="description_parse_rule" value="&gt;(.*)" />