Mercurial > repos > galaxyp > maxquant

changeset 22:9c52362ae7bb draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc
author galaxyp
date Mon, 18 Mar 2024 13:07:04 +0000
parents 8934bc76bb52
children
files macros.xml maxquant.xml maxquant_mqpar.xml
diffstat 3 files changed, 9 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/macros.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -88,6 +88,11 @@
                     - [iodoTMT6plex-Cys130,'',0,0,0,0,True]
                     - [iodoTMT6plex-Cys131,'',0,0,0,0,True]
     </token>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">maxquant</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">maxquant</requirement>
@@ -910,8 +915,7 @@
                     <param name="cp1" type="float" label="correction factor +1%" value="0.0"/>
                     <param name="cp2" type="float" label="correction factor +2%" value="0.0"/>
                     <param type="boolean" name="tmtlike" checked="false"
-                           label="TMT-like"
-                           truevalue="True" falsevalue="False"/>
+                           label="TMT-like" truevalue="true" falsevalue="false"/>
                 </repeat>
             </when>
         </conditional>
--- a/maxquant.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/maxquant.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -2,6 +2,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="required_files"/>
     <command detect_errors="exit_code"><![CDATA[
--- a/maxquant_mqpar.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/maxquant_mqpar.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -2,6 +2,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="required_files"/>
     <command detect_errors="exit_code"><![CDATA[
@@ -131,7 +132,7 @@
     <expand macro="outputs"/>
 
     <tests>
-        <test>
+        <test expect_num_outputs="19">
             <param name="ftype" value=".mzxml" />
             <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" />
             <param name="fasta_files" value="bsa.fasta" />