Mercurial > repos > galaxyp > maxquant
diff test-data/01/combined/txt/mzTab.mzTab @ 12:0839f84def5e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
| author | galaxyp |
|---|---|
| date | Sun, 20 Jun 2021 16:37:41 +0000 |
| parents | dcd39bcc7481 |
| children | 8934bc76bb52 |
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--- a/test-data/01/combined/txt/mzTab.mzTab Tue Jun 15 07:55:59 2021 +0000 +++ b/test-data/01/combined/txt/mzTab.mzTab Sun Jun 20 16:37:41 2021 +0000 @@ -1,49 +1,42 @@ -MTD mzTab-version 1.0.0 -MTD mzTab-mode Complete -MTD mzTab-type Identification -MTD title null -MTD description null -MTD software[1] [MS, MS:1001583, MaxQuant,1.6.10.43] -COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] -MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] -MTD fixed_mod[1]-site C -MTD fixed_mod[1]-position Anywhere -COM [, CHEMMOD:15.9949146221, Oxidation (M),] -MTD variable_mod[1] [, , CHEMMOD:15.9949146221,] -MTD variable_mod[1]-site M -MTD variable_mod[1]-position Anywhere -MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ] -MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ] -MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] -MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda:PEP, ] -MTD ms_run[1]-format [MS, MS:1002996, Andromeda:apl file format, ] -MTD ms_run[1]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.secpep.sil0_0.apl -MTD ms_run[1]-id_format [MS, MS:1000776, scan number only nativeID format, ] -MTD ms_run[2]-format [MS, MS:1002996, Andromeda:apl file format, ] -MTD ms_run[2]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.iso_0.apl -MTD ms_run[2]-id_format [MS, MS:1000776, scan number only nativeID format, ] - -PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] search_engine_score[1]_ms_run[2] num_psms_ms_run[1] num_psms_ms_run[2] num_peptides_distinct_ms_run[1] num_peptides_distinct_ms_run[2] num_peptides_unique_ms_run[1] num_peptides_unique_ms_run[2] ambiguity_members modifications protein_coverage opt_global_cv_MS:1002217_decoy_peptide -PRT CON__P02769 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.22453365714539 null null null null null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 0 -PRT CON__ENSEMBL:ENSBTAP00000001528 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.46941253488722 null null null null null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 0 -PRT CON__ENSEMBL:ENSBTAP00000016046 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 8.04777465053044 null null null null null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 0 -PRT CON__ENSEMBL:ENSBTAP00000018574 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.73737648138078 null null null null null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 0 -PRT CON__P50446 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.03764269117454 null null null null null null null null CON__P50446 null 0.025 0 -PRT CON__Q03247 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.81086493552667 null null null null null null null null CON__Q03247 null 0.025 0 -PRT CON__Q14CN4-1 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.99478997658237 null null null null null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 0 - -PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide -PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 8.95829478642414E-05 null 0.570428333333333 2 419.22 419.22127 ms_run[2]:index=5 R R 646 652 96 0 -PSM LLESEECR 2 CON__Q14CN4-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 -PSM LLESEECR 2 CON__Q3SY84 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 -PSM LLESEECR 2 CON__Q9R0H5 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 -PSM LVTDLTK 3 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 -PSM LVTDLTK 3 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 -PSM LVTDLTK 3 CON__P02768-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 -PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.304175 2 629.36 629.35608 ms_run[2]:index=31 R Q 408 417 52 0 -PSM QLELEKQLEK 5 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.487221666666667 2 629.36 629.35608 ms_run[2]:index=30 R Q 408 417 82 0 -PSM QLELEKQLEK 6 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.570428333333333 3 419.91 419.90648 ms_run[1]:index=5 R Q 408 417 96 0 -PSM SLSAIRER 7 CON__Q03247 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.0965533333333333 2 466.27 466.26962 ms_run[1]:index=2 R F 190 197 17 0 -PSM SQTSHRGYSASSAR 8 CON__P50446 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00916974606023747 null 0.309418333333333 2 747.86 747.85583 ms_run[2]:index=48 K V 9 22 53 0 -PSM TLGPWGQR 9 CON__ENSEMBL:ENSBTAP00000018574 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.000183072671316044 null 0.425933333333333 2 457.75 457.74578 ms_run[2]:index=9 R D 20 27 72 0 - +MTD mzTab-version 1.0.0 +MTD mzTab-mode Complete +MTD mzTab-type Identification +MTD title null +MTD description null +MTD software[1] [MS, MS:1001583, MaxQuant,1.6.17.0] +COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] +MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] +MTD fixed_mod[1]-site C +MTD fixed_mod[1]-position Anywhere +COM [, CHEMMOD:15.9949146221, Oxidation (M),] +MTD variable_mod[1] [, , CHEMMOD:15.9949146221,] +MTD variable_mod[1]-site M +MTD variable_mod[1]-position Anywhere +MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ] +MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ] +MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] +MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda PEP, ] +MTD ms_run[1]-format [MS, , ,] +MTD ms_run[1]-location file:///tmp/tmp9jbmb6lc/job_working_directory/000/3/working/BSA_min_23.mzXML +MTD ms_run[1]-id_format [MS, , ,] + +PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage +PRT CON__P02769 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 +PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 +PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 +PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 +PRT CON__Q03247 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__Q03247 null 0.025 +PRT CON__Q14CN4-1 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 + +PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide +PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0 +PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LVTDLTK 3 CON__P02769 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM LVTDLTK 3 bsa 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0 +PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0 +PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0 +