Mercurial > repos > galaxyp > maxquant

annotate test-data/01/combined/txt/mzTab.mzTab @ 12:0839f84def5e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author galaxyp
date Sun, 20 Jun 2021 16:37:41 +0000
parents dcd39bcc7481
children 8934bc76bb52
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12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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diff changeset
1 MTD mzTab-version 1.0.0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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2 MTD mzTab-mode Complete
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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3 MTD mzTab-type Identification
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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4 MTD title null
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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5 MTD description null
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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6 MTD software[1] [MS, MS:1001583, MaxQuant,1.6.17.0]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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7 COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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8 MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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9 MTD fixed_mod[1]-site C
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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10 MTD fixed_mod[1]-position Anywhere
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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11 COM [, CHEMMOD:15.9949146221, Oxidation (M),]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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12 MTD variable_mod[1] [, , CHEMMOD:15.9949146221,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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13 MTD variable_mod[1]-site M
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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14 MTD variable_mod[1]-position Anywhere
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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15 MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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16 MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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17 MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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18 MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda PEP, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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19 MTD ms_run[1]-format [MS, , ,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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20 MTD ms_run[1]-location file:///tmp/tmp9jbmb6lc/job_working_directory/000/3/working/BSA_min_23.mzXML
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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21 MTD ms_run[1]-id_format [MS, , ,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
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22
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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23 PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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24 PRT CON__P02769 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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25 PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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26 PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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27 PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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28 PRT CON__Q03247 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__Q03247 null 0.025
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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29 PRT CON__Q14CN4-1 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
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30
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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31 PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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32 PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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33 PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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34 PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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35 PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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36 PSM LVTDLTK 3 CON__P02769 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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37 PSM LVTDLTK 3 bsa 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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38 PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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39 PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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40 PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
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41 PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
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