Mercurial > repos > galaxyp > maxquant

changeset 13:181bd6a5f6ce draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ea679515491b0e9e13ec0084b59a40457eb355cc"
author galaxyp
date Fri, 25 Jun 2021 07:18:03 +0000
parents 0839f84def5e
children e42225f8a659
files macros.xml maxquant.xml test-data/03/config.yml test-data/05/config.yml test-data/05/mqpar.xml
diffstat 5 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Sun Jun 20 16:37:41 2021 +0000
+++ b/macros.xml	Fri Jun 25 07:18:03 2021 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0" ?>
 <macros>
     <token name="@VERSION@">1.6.17.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@VERSION_PTXQC@">1.0.10</token>
     <token name="@SUBSTITUTION_RX@">[^\w\-\s\.]</token>
     <token name="@TMT2PLEX@">
--- a/maxquant.xml	Sun Jun 20 16:37:41 2021 +0000
+++ b/maxquant.xml	Fri Jun 25 07:18:03 2021 +0000
@@ -493,7 +493,7 @@
                     <param name="lfqNormType" type="select" label="Normalization type"
                            multiple="false" help="">
                         <option value="0">None</option>
-                        <option value="1">Classic</option>
+                        <option value="1" selected="true">Classic</option>
                     </param>
                 </when>
                 <when value="reporter_ion_ms2">
--- a/test-data/03/config.yml	Sun Jun 20 16:37:41 2021 +0000
+++ b/test-data/03/config.yml	Fri Jun 25 07:18:03 2021 +0000
@@ -33,7 +33,7 @@
                 enzymes: [Trypsin/P]
                 enzymeMode: 0
                 lfqMode: 1
-                lfqNormType: 0
+                lfqNormType: 1
                 lfqMinEdgesPerNode: 3
                 lfqAvEdgesPerNode: 6
                 lfqMinRatioCount: 2
--- a/test-data/05/config.yml	Sun Jun 20 16:37:41 2021 +0000
+++ b/test-data/05/config.yml	Fri Jun 25 07:18:03 2021 +0000
@@ -38,7 +38,7 @@
                 enzymes: [Trypsin/P]
                 enzymeMode: 0
                 lfqMode: 1
-                lfqNormType: 0
+                lfqNormType: 1
                 lfqMinEdgesPerNode: 3
                 lfqAvEdgesPerNode: 6
                 lfqMinRatioCount: 2
--- a/test-data/05/mqpar.xml	Sun Jun 20 16:37:41 2021 +0000
+++ b/test-data/05/mqpar.xml	Fri Jun 25 07:18:03 2021 +0000
@@ -298,7 +298,7 @@
 			<centroidPosition>0</centroidPosition>
 			<diaQuantMethod>7</diaQuantMethod>
 			<diaFeatureQuantMethod>2</diaFeatureQuantMethod>
-			<lfqNormType>0</lfqNormType>
+			<lfqNormType>1</lfqNormType>
 			<diaTopNForQuant>10</diaTopNForQuant>
 			<diaMinMsmsIntensityForQuant>0</diaMinMsmsIntensityForQuant>
 			<diaTopMsmsIntensityQuantileForQuant>0.85</diaTopMsmsIntensityQuantileForQuant>