Mercurial > repos > galaxyp > metanovo
changeset 3:4a851c02f558 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metanovo commit 420ef6b0ee91e44ed354366a55575c1aa504e380"
| author | galaxyp |
|---|---|
| date | Tue, 29 Mar 2022 20:53:42 +0000 |
| parents | 08b5b0977c61 |
| children | 7a5ff5359b13 |
| files | metanovo.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/metanovo.xml Tue Mar 29 19:58:34 2022 +0000 +++ b/metanovo.xml Tue Mar 29 20:53:42 2022 +0000 @@ -7,7 +7,7 @@ </requirements> <macros> <token name="@TOOL_VERSION@">1.9.4</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@SUBSTITUTION_RX@">[^\w\-\.]</token> <import>macros_modifications.xml</import> </macros> @@ -22,13 +22,13 @@ ln -s '$input_fasta' '$fasta_dir/$fasta_name' && #if $input_type.type == "collection" - #set mgf_names = [re.sub('@SUBSTITUTION_RX@', '_', str($n.element_identifier)) for $n in $input_type.input_mgf_collection] - #for $mgf_name in $mgf_names: - ln -s '$input' '$mgf_dir/$mgf_name' && + #for $input_mgf_item in $input_type.input_mgf_collection: + #set mgf_name = re.sub('@SUBSTITUTION_RX@', '_', str($input_mgf_item.element_identifier)) + ln -s '$input_mgf_item' '$mgf_dir/$mgf_name' && #end for #else #set mgf_name = re.sub('@SUBSTITUTION_RX@', '_', str($input_type.input_mgf.element_identifier)) - ln -s '$input_mgf' '$mgf_dir/$mgf_name' && + ln -s '$input_type.input_mgf' '$mgf_dir/$mgf_name' && #end if cat $metanovo_config > config.sh &&