Mercurial > repos > galaxyp > msconvert

changeset 1:861e3f0c2bb6

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Uploaded
author galaxyp
date Thu, 14 Feb 2013 13:35:37 -0500
parents 10f4a0356342
children 50e30fb68be2
files msconvert2.xml msconvert2_raw.xml msconvert3.xml msconvert3_raw.xml msconvert_subset.xml msconvert_wrapper.py version
diffstat 7 files changed, 7 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/msconvert2.xml	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert2.xml	Thu Feb 14 13:35:37 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="msconvert2" name="msconvert2" version="0.1.0">
+<tool id="msconvert2" name="msconvert2" version="0.2.0">
   <!-- BEGIN_VERSION_DEFAULT -->
   <description>Convert and filter a mass spec peak list</description>
   <!-- END_VERSION_DEFAULT -->
--- a/msconvert2_raw.xml	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert2_raw.xml	Thu Feb 14 13:35:37 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="msconvert2_raw" name="msconvert2_raw" version="0.1.0">
+<tool id="msconvert2_raw" name="msconvert2_raw" version="0.2.0">
   <!-- BEGIN_VERSION_RAW -->
   <description>Convert and filter a Thermo Finnigan RAW file</description>
   <!-- END_VERSION_RAW -->
--- a/msconvert3.xml	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert3.xml	Thu Feb 14 13:35:37 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="msconvert3" name="msconvert3" version="0.1.0">
+<tool id="msconvert3" name="msconvert3" version="0.2.0">
   <!-- BEGIN_VERSION_DEFAULT -->
   <description>Convert and filter a mass spec peak list</description>
   <!-- END_VERSION_DEFAULT -->
--- a/msconvert3_raw.xml	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert3_raw.xml	Thu Feb 14 13:35:37 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="msconvert3_raw" name="msconvert3_raw" version="0.1.0">
+<tool id="msconvert3_raw" name="msconvert3_raw" version="0.2.0">
   <!-- BEGIN_VERSION_RAW -->
   <description>Convert and filter a Thermo Finnigan RAW file</description>
   <!-- END_VERSION_RAW -->
--- a/msconvert_subset.xml	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert_subset.xml	Thu Feb 14 13:35:37 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="msconvert_subset" name="Subset Peak List" version="0.1.0">
+<tool id="msconvert_subset" name="Subset Peak List" version="0.2.0">
   <description>against list of scan numbers or indices.</description>
   <command interpreter="python">
     msconvert_wrapper.py 
--- a/msconvert_wrapper.py	Wed Dec 19 00:10:08 2012 -0500
+++ b/msconvert_wrapper.py	Thu Feb 14 13:35:37 2013 -0500
@@ -137,9 +137,8 @@
     return unique_numbers
 
 
-# TODO: Test on windows
 def shellquote(s):
-    return "'" + s.replace("'", "'\\''") + "'"
+    return '"' + s.replace('"', '\\"') + '"'
 
 
 def _add_filter_line_from_file(filter_file, options, file_num=None):
--- a/version	Wed Dec 19 00:10:08 2012 -0500
+++ b/version	Thu Feb 14 13:35:37 2013 -0500
@@ -1,1 +1,1 @@
-0.1.0
\ No newline at end of file
+0.2.0
\ No newline at end of file