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1 # OpenMS
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2
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3 This repository is in an early alpha state and many OpenMS tools are
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4 not yet available or are largely untested. If there is a tool that is
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5 part of OpenMS but not available here, let John Chilton
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6 (jmchilton@gmail.com) and he will try to add it.
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7
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8 These tools require Galaxy to be equipped with common proteomic
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9 datatypes. These can be obtained by installing Ira Cooke's ProtK via
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10 the tool shed or merging the changesets from the following repository
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11 into your Galaxy instance:
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12
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13 https://bitbucket.org/galaxyp/galaxy-dist-proteomics
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14
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15 # Installing
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16
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17 These tools all require OpenMS and may require other dependencies
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18 (such as PepNovo for instance).
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19
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20 For Galaxy-P we are installing this tool via CloudBioLinux
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21 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio\
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22 _proteomics.py). While
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23 this fabric script may not be exactly appropriate for your environment
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24 it may serve as a template for how to install this software.
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25
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