comparison id_file_converter.xml @ 4:1183846e70a1 draft

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3:8fa16707e162

    openms_wrapper.py --executable 'IDFileConverter' --config $config
  </command>
  <configfiles>
    <configfile name="config">[simple_options]
in=${in}
in_type=${in.ext}
out=${out}
out_type=${output_type}
</configfile>
  </configfiles>
  <inputs>
    <param format="pepxml,protxml,idxml" name="in" type="data" label="Input Identification File"/>
    <param name="output_type" type="select" label="Output Type">
      <option value="idxml">idXML</option>
      <option value="pepxml">pepXM</option>
      <option value="mzid">mzIdentML</option>
      <option value="fasta">FASTA</option>
    </param>    
  </inputs>
  <outputs>
    <data format="idxml" name="out">
      <change_format>
        <when input="output_type" value="pepxml" format="pepxml" />
        <when input="output_type" value="mzid" format="mzid" />
        <when input="output_type" value="fasta" format="fasta" />
      </change_format>
    </data>
  </outputs>
  <help>
**What it does**

4:1183846e70a1

    openms_wrapper.py --executable 'IDFileConverter' --config $config
  </command>
  <configfiles>
    <configfile name="config">[simple_options]
in=${in}
out=${out}
out_type=${output_type}
</configfile>
  </configfiles>
  <inputs>
    <param format="pepxml,protxml,idxml" name="in" type="data" label="Input Identification File"/>
    <param name="output_type" type="select" label="Output Type">
      <option value="idXML">idXML</option>
      <option value="pepXML">pepXML</option>
      <option value="mzid">mzIdentML</option>
      <option value="FASTA">FASTA</option>
    </param>    
  </inputs>
  <outputs>
    <data format="idxml" name="out">
      <change_format>
        <when input="output_type" value="pepXML" format="pepxml" />
        <when input="output_type" value="mzid" format="mzid" />
        <when input="output_type" value="FASTA" format="fasta" />
      </change_format>
    </data>
  </outputs>
  <help>
**What it does**