Mercurial > repos > galaxyp > openms

diff id_file_converter.xml @ 4:1183846e70a1 draft

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Uploaded
author galaxyp
date Wed, 19 Jun 2013 13:15:44 -0400
parents cf0d72c7b482
children
line wrap: on
line diff
--- a/id_file_converter.xml	Fri May 10 17:31:59 2013 -0400
+++ b/id_file_converter.xml	Wed Jun 19 13:15:44 2013 -0400
@@ -13,7 +13,6 @@
   <configfiles>
     <configfile name="config">[simple_options]
 in=${in}
-in_type=${in.ext}
 out=${out}
 out_type=${output_type}
 </configfile>
@@ -21,18 +20,18 @@
   <inputs>
     <param format="pepxml,protxml,idxml" name="in" type="data" label="Input Identification File"/>
     <param name="output_type" type="select" label="Output Type">
-      <option value="idxml">idXML</option>
-      <option value="pepxml">pepXM</option>
+      <option value="idXML">idXML</option>
+      <option value="pepXML">pepXML</option>
       <option value="mzid">mzIdentML</option>
-      <option value="fasta">FASTA</option>
+      <option value="FASTA">FASTA</option>
     </param>    
   </inputs>
   <outputs>
     <data format="idxml" name="out">
       <change_format>
-        <when input="output_type" value="pepxml" format="pepxml" />
+        <when input="output_type" value="pepXML" format="pepxml" />
         <when input="output_type" value="mzid" format="mzid" />
-        <when input="output_type" value="fasta" format="fasta" />
+        <when input="output_type" value="FASTA" format="fasta" />
       </change_format>
     </data>
   </outputs>