comparison idxml_to_tabular.xml @ 4:1183846e70a1 draft

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3:8fa16707e162

  </command>
  <configfiles>
    <configfile name="config">[simple_options]
in=${in}
out=${out}
#if $dump_type == "protein"
proteins_only=true
#end if
#if $dump_type == "pepetide"
peptides_only=true
#end if
$extra_rt
</configfile>
  </configfiles>
  <inputs>
    <param format="idxml" name="in" type="data" label="Input Identification File"/>
    <param name="dump_type" type="select" label="Export type">
      <option value="all">Run, peptide, and protein information</option>
      <option value="protein">Run and protein information only</option>
      <option value="peptide">Peptide information only</option>
    </param>
    <param name="extra_rt" type="boolean" truevalue="first_dim_rt=true" falsevalue="" label="Include RT information (if present)" />
  </inputs>
  <outputs>
    <data format="tabular" name="out">
    </data>
  </outputs>

4:1183846e70a1

  </command>
  <configfiles>
    <configfile name="config">[simple_options]
in=${in}
out=${out}
$dump_type
id!first_dim_rt=$extra_rt
</configfile>
  </configfiles>
  <inputs>
    <param format="idxml" name="in" type="data" label="Input Identification File"/>
    <param name="dump_type" type="select" label="Export type">
      <option value="">Run, peptide, and protein information</option>
      <option value="id!proteins_only=true">Run and protein information only</option>
      <option value="id!peptides_only=true">Peptide information only</option>
    </param>
    <param name="extra_rt" type="boolean" label="Include RT information (if present)" />
  </inputs>
  <outputs>
    <data format="tabular" name="out">
    </data>
  </outputs>