Mercurial > repos > galaxyp > openms
diff idxml_to_tabular.xml @ 4:1183846e70a1 draft
Uploaded
author | galaxyp |
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date | Wed, 19 Jun 2013 13:15:44 -0400 |
parents | cf0d72c7b482 |
children |
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--- a/idxml_to_tabular.xml Fri May 10 17:31:59 2013 -0400 +++ b/idxml_to_tabular.xml Wed Jun 19 13:15:44 2013 -0400 @@ -14,23 +14,18 @@ <configfile name="config">[simple_options] in=${in} out=${out} -#if $dump_type == "protein" -proteins_only=true -#end if -#if $dump_type == "pepetide" -peptides_only=true -#end if -$extra_rt +$dump_type +id!first_dim_rt=$extra_rt </configfile> </configfiles> <inputs> <param format="idxml" name="in" type="data" label="Input Identification File"/> <param name="dump_type" type="select" label="Export type"> - <option value="all">Run, peptide, and protein information</option> - <option value="protein">Run and protein information only</option> - <option value="peptide">Peptide information only</option> + <option value="">Run, peptide, and protein information</option> + <option value="id!proteins_only=true">Run and protein information only</option> + <option value="id!peptides_only=true">Peptide information only</option> </param> - <param name="extra_rt" type="boolean" truevalue="first_dim_rt=true" falsevalue="" label="Include RT information (if present)" /> + <param name="extra_rt" type="boolean" label="Include RT information (if present)" /> </inputs> <outputs> <data format="tabular" name="out">