diff high_res_precursosr_mass_corrector.xml @ 0:ba86fd127f5a draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/high_res_precursosr_mass_corrector.xml	Wed Dec 19 00:32:25 2012 -0500
@@ -0,0 +1,34 @@
+<tool id="openms_high_res_precursor_mass_corrector" version="0.1" name="Precursor Mass Corrector (Hi Res)">
+  <description>
+precursor m/z correction on picked (centroided) high resolution data.
+  </description>
+  <requirements>
+    <requirement type="package">openms</requirement>
+  </requirements>
+  <configfiles>
+    <configfile name="config">[simple_options]
+in=${input}
+out=${out}
+</configfile>
+  </configfiles>  
+  <command interpreter="python">
+    openms_wrapper.py -executable 'HighResPrecursorMassCorrector' -config $config
+  </command>
+  <inputs>
+    <param format="mzML" name="input" type="data" label="Input picked peak list"/>
+  </inputs>
+  <outputs>
+    <data format="mzML" name="output" />
+  </outputs>
+  <help>
+**What it does**
+
+This tool performs precursor mz correction on picked (=centroided) high resolution data.
+
+**Citation**
+
+For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
+
+If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms    
+  </help>
+</tool>