view high_res_precursosr_mass_corrector.xml @ 0:ba86fd127f5a draft

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<tool id="openms_high_res_precursor_mass_corrector" version="0.1" name="Precursor Mass Corrector (Hi Res)">
  <description>
precursor m/z correction on picked (centroided) high resolution data.
  </description>
  <requirements>
    <requirement type="package">openms</requirement>
  </requirements>
  <configfiles>
    <configfile name="config">[simple_options]
in=${input}
out=${out}
</configfile>
  </configfiles>  
  <command interpreter="python">
    openms_wrapper.py -executable 'HighResPrecursorMassCorrector' -config $config
  </command>
  <inputs>
    <param format="mzML" name="input" type="data" label="Input picked peak list"/>
  </inputs>
  <outputs>
    <data format="mzML" name="output" />
  </outputs>
  <help>
**What it does**

This tool performs precursor mz correction on picked (=centroided) high resolution data.

**Citation**

For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``

If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms    
  </help>
</tool>